PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H01487.1.p
Common NameEUGRSUZ_H01487, LOC104457006
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 683aa    MW: 75697.3 Da    PI: 5.8375
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H01487.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH444.1e-14465511455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Eucgr.H01487.1.p 465 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 511
                       7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.0E-579191IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.625461510IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-19463528IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-19465527IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.47E-15465515No hitNo description
PfamPF000101.1E-11465510IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-17467516IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MATPPSSRLQ SMLQSAVQSI KWSYSLFWQI CPQQGILIWG DGYYNGPIKT RKTVQPMEVS  60
AEEASLQRSQ QLRELYESLS AGETNQPARR PCAALSPEDL TETEWFYLMC VSFSFPPGAG  120
LPGKAYARRQ HAWLTGANEV DSKTFSRAIL AKSARIQTVV CIPLLDGVVE FGTTERVQED  180
ISLVNHVKTF FVDHHPPHPP KPALSEHSTS NPAATSSGHH RFHSPPVPSY APADPPAAAN  240
QGDEEEEDDD DDDEEGESDS EAETGRQGAA AAAQNPHGAG PANNAEPSEF EMSEDIRLGS  300
PDDGSNNLDS DFPMLTINST AADHQRQVDS FRAETTRRWQ MMQDPARSGL QTPPSVPPAL  360
DELSQEDTHY SQTVSTILQN QPRWADSTSY VSYSTQSAFS KWTSRSDHLL HVPAEGTSQW  420
LLKYILFTIP FLHTKYRDEN SPKSRDGDSS SRFRKGNPQD ELSANHVLAE RRRREKLNER  480
FIILRSLVPF VTKMDKASIL GDTIEYVKQL RKKIQDLEAR NRQMEADHRT KEGELQRTTS  540
LKDLRSAASS VERSSRASLP GSGSDKRKMR IVEGGSGAKP KAVESPPPPL PPPTSETSVQ  600
VSIIESDALL ELQCPHREGL LLDLMQMLRD LRIETTAVQS SLTNGFFVAE LRAKVKENVN  660
GKKASIVEVK RAIQQLIPHT DS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-22819112192Transcription factor MYC3
4rqw_B2e-22819112192Transcription factor MYC3
4rru_A5e-22818751227Transcription factor MYC3
4rs9_A2e-22819112192Transcription factor MYC3
4ywc_A5e-22818751227Transcription factor MYC3
4ywc_B5e-22818751227Transcription factor MYC3
4yz6_A2e-22819112192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1469474ERRRRE
2470475RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H01487.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010070223.10.0PREDICTED: basic helix-loop-helix protein A
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A059AYM20.0A0A059AYM2_EUCGR; Uncharacterized protein
STRINGXP_010070223.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94222836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-106bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]