PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H01962.1.p
Common NameEUGRSUZ_H01962
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 280aa    MW: 32148.8 Da    PI: 9.7223
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H01962.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.93.2e-1718941799
                      E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                       +pkkf+ ++g++   s  + l+ +sg+ Wev+l   ++ ++++l++GW +Fvk   +k g f+vF+++g s f  +v +f+k
  Eucgr.H01962.1.p 18 GIPKKFVIKYGSN--LSDLVFLQVPSGQAWEVEL--VRRTDGVWLRRGWPDFVKHYAIKHGHFLVFRYEGGSAF--RVVIFDK 94
                      49********988..888999999**********..99999****************************99999..9999987 PP
2B345.71.2e-142012703399
                       -SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                B3  33 sktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                       + ++ l+ ++ r W  ++++   +++ ++ + +GWk Fv++n+Lk+gD++vF+l+++  + +++v +fr+
  Eucgr.H01962.1.p 201 GGDIDLYVSNERFWLARYKFgiYGRKTQVKINGGWKLFVQDNNLKVGDVCVFELTRKvGQVSFRVVIFRA 270
                       3368888999999999999987777888***************************988999999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010193.8E-11995IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-201695IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-141894IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.0E-211895IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.1831995IPR003340B3 DNA binding domain
CDDcd100171.69E-151993No hitNo description
Gene3DG3DSA:2.40.330.105.3E-15172271IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.94E-16173271IPR015300DNA-binding pseudobarrel domain
CDDcd100171.31E-15178269No hitNo description
SMARTSM010193.7E-10179271IPR003340B3 DNA binding domain
PfamPF023622.3E-12201270IPR003340B3 DNA binding domain
PROSITE profilePS5086311.843204271IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MHCNSPDLLF QTHTYANGIP KKFVIKYGSN LSDLVFLQVP SGQAWEVELV RRTDGVWLRR  60
GWPDFVKHYA IKHGHFLVFR YEGGSAFRVV IFDKSASEIK YPIITELPKR EENEGDTLVE  120
VFEDHFDRPL RIQSGASNIV CDVNAGLNSS CWKRERPFRG GEKSEALKRA ASFQYPNPFF  180
LTLMQPSLIR HSLHIPSYRS GGDIDLYVSN ERFWLARYKF GIYGRKTQVK INGGWKLFVQ  240
DNNLKVGDVC VFELTRKVGQ VSFRVVIFRA NHDAIELGR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H01962.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010026406.11e-118PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1
TrEMBLA0A059AZI70.0A0A059AZI7_EUCGR; Uncharacterized protein
STRINGXP_010026401.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14219723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.11e-22B3 family protein