PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H01965.1.p
Common NameEUGRSUZ_H01965
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 282aa    MW: 32717.5 Da    PI: 9.0835
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H01965.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.61.3e-1915105299
                       EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                       fk+   sd+l++grl +pkkf++++g++   s  + l   sg +Wev+l   ++ ++ +l++GW +Fvk   ++ g f+vF+++g s f  +v
  Eucgr.H01965.1.p  15 FKIV-LSDALQNGRLGIPKKFVRKYGSS--LSDLVFLHLASGDVWEVEL--LRGNDGAFLRRGWPDFVKHYAIEHGHFLVFRYEGGSAF--RV 100
                       4443.59******************977..776788888**********..88888889*************************99999..99 PP

                       EEE-S CS
                B3  95 kvfrk 99 
                        +f+k
  Eucgr.H01965.1.p 101 VIFDK 105
                       99987 PP
2B357.91.8e-18161261199
                       EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                       ff + ++++  +++ l+ p +f+ ++  +   +++ +++l+ ++ r W+v++++   ++++++ +  GWk+Fv++n+Lk gD++vF+ +++ +
  Eucgr.H01965.1.p 161 FFLAIMQPSFIRHC-LSAPARFFMKYipN--FRSKGDIILYVSDERFWSVRYKFgiYGRRRQIKFNCGWKRFVQDNNLKLGDVCVFEIMWKvH 250
                       67777888889888.***********752..344558***************9988888888***************************9999 PP

                       EE..EEEEE-S CS
                B3  89 efelvvkvfrk 99 
                       + +++v +fr+
  Eucgr.H01965.1.p 251 QISFRVLIFRA 261
                       99999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-257106IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-257106IPR015300DNA-binding pseudobarrel domain
CDDcd100176.23E-1812104No hitNo description
PROSITE profilePS5086314.45213106IPR003340B3 DNA binding domain
SMARTSM010193.0E-2014106IPR003340B3 DNA binding domain
PfamPF023621.3E-1615105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-23154263IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-22155262IPR015300DNA-binding pseudobarrel domain
CDDcd100171.38E-16160260No hitNo description
PROSITE profilePS5086312.548160262IPR003340B3 DNA binding domain
SMARTSM010193.2E-15161262IPR003340B3 DNA binding domain
PfamPF023625.0E-16161261IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MVGRGYFESQ TPHFFKIVLS DALQNGRLGI PKKFVRKYGS SLSDLVFLHL ASGDVWEVEL  60
LRGNDGAFLR RGWPDFVKHY AIEHGHFLVF RYEGGSAFRV VIFDKSATEI KYPLVSENDD  120
PRMEEDVGDA SVEVFEDHSD QVSEKSEALE RATSFQSPNP FFLAIMQPSF IRHCLSAPAR  180
FFMKYIPNFR SKGDIILYVS DERFWSVRYK FGIYGRRRQI KFNCGWKRFV QDNNLKLGDV  240
CVFEIMWKVH QISFRVLIFR ANGDTVEFGR GHLHVKLCFI R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H01965.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018716422.10.0PREDICTED: B3 domain-containing transcription factor VRN1 isoform X2
TrEMBLA0A059B0610.0A0A059B061_EUCGR; Uncharacterized protein
STRINGXP_010026406.17e-94(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14219723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.13e-23B3 family protein