PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H02390.1.p
Common NameEUGRSUZ_H02390
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 210aa    MW: 23686.6 Da    PI: 6.3612
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H02390.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.51.2e-131056455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                       h ++Er+RR+++ ++f  L  ++P +     kK++Ka+iL  A++Y+k+Lq
  Eucgr.H02390.1.p 10 EHLIAERKRREKLSQSFIALSAIIPGL-----KKMDKASILSDAINYMKQLQ 56
                      5999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.656655IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-181067IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-111056IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-171070IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.54E-121160No hitNo description
SMARTSM003538.4E-151261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MSRPPIDTRE HLIAERKRRE KLSQSFIALS AIIPGLKKMD KASILSDAIN YMKQLQERVK  60
KLEEEVAIRT VESVVIVKKS QVLAFDDIFS LDENSNHFEQ QLPEIEARVL DKHVLLRIHY  120
EKQKGCMTEI LREIKKLNLS ILNSSVLSFG SSILEMTIVA QMDVDFCMNI EDLVKSLHTS  180
CVGLDEATPC ILIANGNGSC SERRIGLDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-131165963Transcription factor MYC2
5gnj_B2e-131165963Transcription factor MYC2
5gnj_E2e-131165963Transcription factor MYC2
5gnj_F2e-131165963Transcription factor MYC2
5gnj_G2e-131165963Transcription factor MYC2
5gnj_I2e-131165963Transcription factor MYC2
5gnj_M2e-131165963Transcription factor MYC2
5gnj_N2e-131165963Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11419ERKRRE
21520RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H02390.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010026565.21e-150PREDICTED: transcription factor bHLH19
SwissprotQ1PF161e-51BH019_ARATH; Transcription factor bHLH19
TrEMBLA0A059B0T81e-150A0A059B0T8_EUCGR; Uncharacterized protein
STRINGXP_010026565.11e-150(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.14e-48bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]