PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.H02392.1.p

Common Name

EUGRSUZ_H02392

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 197aa MW: 22202.5 Da PI: 6.5016

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.H02392.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.7	3.1e-06	154	181	3	30
HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 3 rahnerErrRRdriNsafeeLrellPka 30 + h ++Er+RR+++ ++f L ++P + Eucgr.H02392.1.p 154 QEHVIAERKRRQKLSQSFIALSAIIPGL 181 5799**********************76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.38E-6	148	186	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.7E-6	155	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.67E-5	156	190	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MEILSPKFFP EIVTEDPFHH MYHPQQMVNS FDFPLDDFDF NLFSSEMYPP CGPFVPETMQ 60 CPMDPLVEAA PATIERPMKK PKSDIWSNAC SPETYKAPRT ATSSPSSSPQ LISFGSPDLS 120 PPESQNFYGV CELQDCQKEM KRVGAMSRPT VHTQEHVIAE RKRRQKLSQS FIALSAIIPG 180 LKKVNLLRCT SFHSLF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	159	164	ERKRRQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.H02392.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010026567.2	1e-135	PREDICTED: transcription factor bHLH18
TrEMBL	A0A059B162	1e-143	A0A059B162_EUCGR; Uncharacterized protein
STRING	XP_010026567.1	1e-113	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22750.2	2e-12	bHLH family protein

Link Out ? help Back to Top
Phytozome	Eucgr.H02392.1.p