PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H02504.1.p
Common NameEUGRSUZ_H02504
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 204aa    MW: 23018.5 Da    PI: 11.6515
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H02504.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.11.4e-151349541
                      SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
            SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                      n + r + + kR+ng++KKA E SvLC+++ +v++f 
  Eucgr.H02504.1.p 13 NARARRIAYEKRKNGLMKKAREFSVLCGVDTCVVVFP 49
                      77889******************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554557.98E-17183IPR002100Transcription factor, MADS-box
SMARTSM004323.1E-11166IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.058148IPR002100Transcription factor, MADS-box
CDDcd002669.07E-18282No hitNo description
PRINTSPR004044.7E-8323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-151350IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MGRGRTPHGL VPNARARRIA YEKRKNGLMK KAREFSVLCG VDTCVVVFPE AAAGVDRPIA  60
PEVWPPDHGE ARRIIERYRS ASRDALADRK KKKKKKEKLD LAEARRGERG EEGRDGGRDL  120
GSVQRRRPER RRGAAEDAAP GVRGRYAGMG RRCSAQQRSL LVLLRRRRLG NPRNGGGRFY  180
FLPFFSDGDD RFLTMEFLLI FLS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18793DRKKKKK
28896RKKKKKKKE
38897RKKKKKKKEK
48995KKKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H02504.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A059B0J01e-141A0A059B0J0_EUCGR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59481947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.15e-19M-type_MADS family protein