PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H02505.1.p
Common NameEUGRSUZ_H02505, LOC104414145
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 213aa    MW: 22996.3 Da    PI: 9.0639
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H02505.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.42.4e-151349541
                      SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
            SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                      n + r + + kR++g++KKA E SvLC+++ +v++f 
  Eucgr.H02505.1.p 13 NARARRIAYEKRKKGLMKKAREFSVLCGVDTCVVVFP 49
                      77889******************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-11167IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.01E-16184IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.862148IPR002100Transcription factor, MADS-box
CDDcd002661.67E-17288No hitNo description
PRINTSPR004042.0E-6323IPR002100Transcription factor, MADS-box
PfamPF003192.2E-151350IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MGRGKTPHGL VPNARARRIA YEKRKKGLMK KAREFSVLCG VDTCVVVFPE AAAAGGDRPT  60
TPEVWPPDSG EARRIIERYR SAGRKEKKLD LGGKGELLKD FSKSQLRSLL SILGDRVDLA  120
KRKLAAMKAE KRVAMAGVIL GPCNEEGPSV DAVPQETPHQ ACAASTPEWA AGAQANNAPC  180
SYSSVDGCRD TLAMEEDDST FFRTFLTETI VF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11425RARRIAYEKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H02505.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010023474.11e-155PREDICTED: MADS-box transcription factor 4
TrEMBLA0A059B0V51e-154A0A059B0V5_EUCGR; Uncharacterized protein
STRINGXP_010023474.11e-155(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59481947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.12e-17M-type_MADS family protein