PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H02508.1.p
Common NameEUGRSUZ_H02508
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 190aa    MW: 21739.1 Da    PI: 11.4054
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H02508.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.55.5e-1689125541
                       SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
            SRF-TF   5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 
                       n + r + f kR+ng++KKA E SvLC+++ +v++f 
  Eucgr.H02508.1.p  89 NARERRIAFEKRKNGLMKKAREFSVLCGVDTCVVVFP 125
                       7899*******************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.80177124IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-1777161IPR002100Transcription factor, MADS-box
SMARTSM004322.6E-1277143IPR002100Transcription factor, MADS-box
CDDcd002661.73E-1778158No hitNo description
PRINTSPR004047.6E-87999IPR002100Transcription factor, MADS-box
PfamPF003195.9E-1689125IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-899114IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MREPRSRQAL ATDKNRDRRP RLLRRPGPHR SFHSRSPAFG LQHRVLRLNS RDLRNPFAVL  60
CSFPVDQEKF RSDRGIMGRG KTPRGLVPNA RERRIAFEKR KNGLMKKARE FSVLCGVDTC  120
VVVFPEAVAA GGDRPTAPEV WPPDSGEARR IIERYRSAGR EEKEKEKEKE KKLGLCGKGE  180
LLKDLSKSQL
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H02508.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010023475.11e-74PREDICTED: agamous-like MADS-box protein AGL82
TrEMBLA0A059B2641e-133A0A059B264_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010023475.15e-74(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59481947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.16e-17M-type_MADS family protein