PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.H02602.1.p

Common Name

EUGRSUZ_H02602

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 236aa MW: 25953 Da PI: 9.9084

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.H02602.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.4	2.9e-09	51	93	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 Er+RR ri++++ +Lr+l+P+ + K++ +iL A eYI +L Eucgr.H02602.1.p 51 VTERKRRTRIKEGLYTLRSLVPNiS------KMDMTSILGDAAEYIVNL 93 46*******************66......*************877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.54E-9	43	96	No hit	No description
SuperFamily	SSF47459	7.33E-15	43	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.668	44	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.7E-8	50	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.8E-7	51	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.3E-14	51	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MKQSVVESME SKDSKSLSKQ TNLSGCHVGA AKRKGVDKQQ EGGKCQAKNL VTERKRRTRI 60 KEGLYTLRSL VPNISKMDMT SILGDAAEYI VNLETEMRKL KEELEKSEKE LCRLKDTDSK 120 SLARTVGHGW GKSLAGKLDN LEISRLDLKT NPKAQVEVNQ IGNGDFLVKI LMSQKHGWFA 180 GMMDGINSLG YTVVDANVTT LNGKVLANLM LELSDGALPK NLRESLMQLA SLISQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.H02602.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010026676.1	1e-166	PREDICTED: transcription factor bHLH90
TrEMBL	A0A059B1V8	1e-170	A0A059B1V8_EUCGR; Uncharacterized protein
STRING	XP_010026676.1	1e-165	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6985	27	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	4e-18	bHLH family protein

Link Out ? help Back to Top
Phytozome	Eucgr.H02602.1.p