PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H02817.1.p
Common NameEUGRSUZ_H02817
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HD-ZIP
Protein Properties Length: 238aa    MW: 26483.6 Da    PI: 8.0745
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H02817.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.34e-061091234256
                       HHHHHHHHHHHHHHH CS
          Homeobox  42 rqVkvWFqNrRakek 56 
                       ++V vWFqNrRa+ k
  Eucgr.H02817.1.p 109 NRVEVWFQNRRARTK 123
                       58***********98 PP
2HD-ZIP_I/II66.75.1e-221101584291
       HD-ZIP_I/II  42 qvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                        v+vWFqnrRARtktkq+E+d+e+Lkr++++l++en+rL+kev+eLr +l
  Eucgr.H02817.1.p 110 RVEVWFQNRRARTKTKQTEVDCEYLKRCCNNLTQENKRLQKEVQELR-AL 158
                       69********************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.8E-12655IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466894.28E-1072127IPR009057Homeodomain-like
SMARTSM003890.003983129IPR001356Homeobox domain
CDDcd000869.52E-685126No hitNo description
PROSITE profilePS500718.827107125IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.7E-5109128IPR009057Homeodomain-like
PfamPF021832.2E-11125159IPR003106Leucine zipper, homeobox-associated
SMARTSM003408.2E-25125168IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MKIWKSHQTN SKTRPFFGGV GVNRDILVVD LDDDDHVSSP NSTVSSISGK RSERDPHGEN  60
EVEAERTSCS CESIEEDGSG GDGARKKLRL SREQSLVLEE TFKEHNTLNR VEVWFQNRRA  120
RTKTKQTEVD CEYLKRCCNN LTQENKRLQK EVQELRALKL SPQLYMHLNP PTTLTMCPSC  180
QRVSVPSASL SPPSSSSVTA SVIGPIGPVH NPFSQSGPSI NPWARLQMQQ GLNNLHS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117125RRARTKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H02817.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010056406.11e-138PREDICTED: homeobox-leucine zipper protein ATHB-4
SwissprotP466021e-72HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A059B2H31e-175A0A059B2H3_EUCGR; Uncharacterized protein
STRINGXP_010056406.11e-138(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25772772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.17e-56homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]