PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H03349.1.p
Common NameEUGRSUZ_H03349, LOC104414709
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 187aa    MW: 21206.5 Da    PI: 9.2334
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H03349.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.11.6e-32107165159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK vk+++fprsYY+Ct++gC+vkk+v+r ++d+ vv++tYeg H+h+
  Eucgr.H03349.1.p 107 LDDGYRWRKYGQKAVKNNRFPRSYYKCTFQGCNVKKQVQRLTKDEGVVVTTYEGMHTHS 165
                       59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.3E-3492165IPR003657WRKY domain
SuperFamilySSF1182903.4E-2999166IPR003657WRKY domain
PROSITE profilePS5081129.23102167IPR003657WRKY domain
SMARTSM007746.7E-38107166IPR003657WRKY domain
PfamPF031067.5E-26108164IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0010055Biological Processatrichoblast differentiation
GO:0032107Biological Processregulation of response to nutrient levels
GO:0043620Biological Processregulation of DNA-templated transcription in response to stress
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MDGYHILFPP SSSSSASAAS PSFPFAHYAY KNAHAFHTGS EMMNHSNETC SSSEVKGELI  60
NSHTDVSQDD EDKAGSDKKK GPSSSSEKKK PRKPRYAFQT RSQVDILDDG YRWRKYGQKA  120
VKNNRFPRSY YKCTFQGCNV KKQVQRLTKD EGVVVTTYEG MHTHSIDKPT DNFEHILNQM  180
HIYNHF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-2897166776Probable WRKY transcription factor 4
2lex_A3e-2897166776Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18693EKKKPRKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00506DAPTransfer from AT5G13080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H03349.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010024173.11e-140PREDICTED: probable WRKY transcription factor 75
TrEMBLA0A059B3M41e-138A0A059B3M4_EUCGR; Uncharacterized protein
STRINGXP_010024173.11e-139(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50928154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.14e-54WRKY DNA-binding protein 75