PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H03356.1.p
Common NameEUGRSUZ_H03356
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 627aa    MW: 69078.2 Da    PI: 5.3862
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H03356.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS345.49.1e-1063316271306
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalklfsevsPil 91 
                       lv+lLl+cAeav+++d  la+++L +l+ ++sp gd+mqR+a++fteAL+arl+   ++  ++++ +p +  + ns e l++++++++++P++
  Eucgr.H03356.1.p 331 LVHLLLACAEAVAKDDYMLARKYLHHLNRIVSPIGDSMQRVASCFTEALSARLTAtlTTRPTSSSAKPFTPFPPNSPEILKYYQILYQACPYI 423
                       68****************************************************965556677778777777889****************** PP

              GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                       kf+h+taNqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+    + e++ etg+ L+++A++l++pfef++ v +
  Eucgr.H03356.1.p 424 KFAHFTANQAIFEAIEFEERVHVIDLDIHQGYQWPAFMQALAARPAGAPFLRITGVGP----EIEAMCETGRCLTELAHSLHIPFEFHP-VGE 511
                       **********************************************************....99*************************.7** PP

              GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                       +ledl++++L+ + gEalaV++v +lhr++   ++l s    +L+++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p+
  Eucgr.H03356.1.p 512 QLEDLKPHMLNRRVGEALAVSSVNRLHRVP--AHCLGS----LLSMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPP 598
                       *****************************9..556666....*************************************************** PP

              GRAS 278 eseerikvErellgreivnvvacegaerr 306
                       +s +r+ vE+ ++++ei+nvvacegaer+
  Eucgr.H03356.1.p 599 DSAQRAQVEQYIFAPEIRNVVACEGAERT 627
                       ***************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.894305627IPR005202Transcription factor GRAS
PfamPF035143.2E-103331627IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MINSLCGSMG SLKSESSCAS KNHLSTSPTG SSSLSLADSK KTPPPTEMDR SGSLTPPSLS  60
FPSLKAQMEE EAEVQSPTTA LLESFFSDQL DGDFMISSPV RAPSGTDGNL SSLPHSPNFS  120
YINSLTYANN IQGQSLSWYS PPRLFSSPLG PLRGKGMSPL HKVNNSSTTT TNNNNNNSSS  180
NSNINNNDNR SSNSNNNHNQ YMQVGSNLAL PAIEDYLEDY QKDEFGVYPS QFDASPMLEC  240
VSVGPRYGGP MSETVGSASQ LTQEGDVYHQ MSCVSSSQMP LSQQLQQEHL HEKWQQQHDQ  300
LTHQHQQNMA DTLMMPIAIG SEQEQDSGLQ LVHLLLACAE AVAKDDYMLA RKYLHHLNRI  360
VSPIGDSMQR VASCFTEALS ARLTATLTTR PTSSSAKPFT PFPPNSPEIL KYYQILYQAC  420
PYIKFAHFTA NQAIFEAIEF EERVHVIDLD IHQGYQWPAF MQALAARPAG APFLRITGVG  480
PEIEAMCETG RCLTELAHSL HIPFEFHPVG EQLEDLKPHM LNRRVGEALA VSSVNRLHRV  540
PAHCLGSLLS MIRDQAPNIV TLVEQEASHN GPYFLGRFLE ALHYYSAIFD SLDATFPPDS  600
AQRAQVEQYI FAPEIRNVVA CEGAERT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-703196277312Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H03356.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021641856.10.0scarecrow-like protein 21
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A059B3200.0A0A059B320_EUCGR; Uncharacterized protein (Fragment)
STRINGcassava4.1_032757m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM165101013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.15e-71RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]