PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H03362.1.p
Common NameEUGRSUZ_H03362, LOC104414720
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 244aa    MW: 26924.5 Da    PI: 10.5774
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H03362.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.36.7e-32151431128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkev 92 
                       lp GfrF+Ptdeelvv+yL++kv + +l++  vi+e+d++ ++P  Lp ++   +++ yfFs+r++++  g++  r a+  gyWk + k+k++
  Eucgr.H03362.1.p  15 LPIGFRFRPTDEELVVHYLRRKVLAVPLPA-AVIPELDVFGTDPGGLPGNL---RERRYFFSRRNRSSG-GRECIRvAAGFGYWKYKTKSKQI 102
                       699***************************.89***************543...4578*****999865.66667768889************ PP

               NAM  93 lsk...kgelvglkktLvfykg..rapkgektdWvmheyrl 128
                       l++   +++++g++ktLvf +g  +a ++ +++W++he+++
  Eucgr.H03362.1.p 103 LASdgtGNQVIGMRKTLVFCEGkrSACDAARSRWILHEFTI 143
                       *998888889**********8732556778*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.09E-388171IPR003441NAC domain
PROSITE profilePS5100540.69815171IPR003441NAC domain
PfamPF023654.9E-2116142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MEVPRFFASA AGIKLPIGFR FRPTDEELVV HYLRRKVLAV PLPAAVIPEL DVFGTDPGGL  60
PGNLRERRYF FSRRNRSSGG RECIRVAAGF GYWKYKTKSK QILASDGTGN QVIGMRKTLV  120
FCEGKRSACD AARSRWILHE FTIAGTRENS KSTSMARAGD ENWAVYRLFQ KKMRPKRSDN  180
GNGDFSHRKR KKSSSVIDLR SEAIAGDSPD TPPPPSSPCS SSITDNGSSC KALDQEDISS  240
SSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-221317215166NO APICAL MERISTEM PROTEIN
1ut4_B2e-221317215166NO APICAL MERISTEM PROTEIN
1ut7_A2e-221317215166NO APICAL MERISTEM PROTEIN
1ut7_B2e-221317215166NO APICAL MERISTEM PROTEIN
4dul_A2e-221317215166NAC domain-containing protein 19
4dul_B2e-221317215166NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187191RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H03362.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010024184.11e-180PREDICTED: NAC domain-containing protein 83
TrEMBLA0A059B3N71e-178A0A059B3N7_EUCGR; Uncharacterized protein
STRINGXP_010024184.11e-179(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18062786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.13e-34NAC domain containing protein 83