PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H03892.1.p
Common NameEUGRSUZ_H03892
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NF-YB
Protein Properties Length: 184aa    MW: 20553.6 Da    PI: 6.2474
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H03892.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB167.12.1e-5222117297
             NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                       +eqdr+lPianv+rimk+ lP nakisk+aket+qec+sefisfvtseasdkc++e+rkt+ngdd++wa+  lGf+dy+ +l+ yl++yre+e
  Eucgr.H03892.1.p  22 KEQDRLLPIANVGRIMKQNLPPNAKISKEAKETMQECMSEFISFVTSEASDKCRKERRKTVNGDDICWAMQALGFDDYASALRRYLHRYREIE 114
                       79******************************************************************************************* PP

             NF-YB  95 gek 97 
                       ge+
  Eucgr.H03892.1.p 115 GER 117
                       997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.1E-5119125IPR009072Histone-fold
SuperFamilySSF471131.86E-3824125IPR009072Histone-fold
PfamPF008082.1E-272791IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006155.3E-175573No hitNo description
PRINTSPR006155.3E-177492No hitNo description
PRINTSPR006155.3E-1793111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MDESNNNPGV ADNALGDDGQ FKEQDRLLPI ANVGRIMKQN LPPNAKISKE AKETMQECMS  60
EFISFVTSEA SDKCRKERRK TVNGDDICWA MQALGFDDYA SALRRYLHRY REIEGERVNQ  120
EKAASGGSEG LATDHYRWHE QSSHAIIGHQ HPSNSRAEEA STSLLSFDAS DQRRKSGSSS  180
RPY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-4421112192Transcription factor HapC (Eurofung)
4g92_B2e-4421112192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H03892.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018716566.11e-136PREDICTED: nuclear transcription factor Y subunit B-4-like
SwissprotO822487e-56NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A059B6281e-135A0A059B628_EUCGR; Uncharacterized protein
STRINGcassava4.1_018746m3e-64(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25528229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.13e-58nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]