PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H04023.1.p
Common NameEUGRSUZ_H04023, LOC104415216
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GATA
Protein Properties Length: 160aa    MW: 17239.6 Da    PI: 10.4865
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H04023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.42.3e-193165135
              GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                      C+ CgttkTplWR gp g+k+LCnaCG++ rkk++
  Eucgr.H04023.1.p 31 CADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 65
                      ********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.5192561IPR000679Zinc finger, GATA-type
SMARTSM004018.6E-142582IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-132765No hitNo description
Gene3DG3DSA:3.30.50.107.3E-162965IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.42E-143082No hitNo description
PROSITE patternPS0034403156IPR000679Zinc finger, GATA-type
PfamPF003203.5E-173165IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MEMQDASDKG SESPGVASSE ESHVTETKKT CADCGTTKTP LWRGGPAGPK SLCNACGIRS  60
RKKRRDLLGV SKKPTEDKKR KKINSHSPSN NSTGNRFGDS LKQKLLAFLR KEVMMQKKSA  120
VPSSSSSSTS SLERQRKKLG EEEQAAVLLM ALSYGSVYA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16281KRRDLLGVSKKPTEDKKRKK
27781KKRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00554DAPTransfer from AT5G49300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H04023.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010024769.11e-113PREDICTED: GATA transcription factor 16
SwissprotQ9FJ104e-42GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A059B6H01e-112A0A059B6H0_EUCGR; Uncharacterized protein
STRINGXP_010024769.11e-112(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50502652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.13e-44GATA transcription factor 16
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]