PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H04254.1.p
Common NameEUGRSUZ_H04254
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 215aa    MW: 24114.7 Da    PI: 4.7205
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H04254.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.5e-20108157355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr+++ +g+++AeIrd + ng   r++lg+f+taeeAa a+++a+ +++g
  Eucgr.H04254.1.p 108 YRGVRRRP-WGKYAAEIRDSTRNG--VRVWLGTFDTAEEAALAYDQAAIAMRG 157
                       9*******.**********44465..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS511119.581137IPR014010REJ domain
SMARTSM003803.4E-39107171IPR001471AP2/ERF domain
PROSITE profilePS5103223.235107165IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-31107165IPR001471AP2/ERF domain
PfamPF008476.0E-15107157IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-23108166IPR016177DNA-binding domain
PRINTSPR003672.2E-11108119IPR001471AP2/ERF domain
CDDcd000182.20E-31108165No hitNo description
PRINTSPR003672.2E-11131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MDWDSSLFQY PSLSEFSTDC SSFNSSESHH FSLDCNPGTY FAPPSLPFNE NDSEEMLLYG  60
VLATARDYSL DTISSSHVAR DHEEVNSRSG DVVHLDGNEG EPAREASYRG VRRRPWGKYA  120
AEIRDSTRNG VRVWLGTFDT AEEAALAYDQ AAIAMRGPLA VLNFPPERHS MKRKSEMKKK  180
KEKEQMLKNV VVLEDLGAAY LEELLKVSED PSPW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-3097167474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H04254.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2296431e-47KP229643.1 UNVERIFIED: Boehmeria nivea AP2/ERF domain-containing protein-like (ERF20) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010024972.11e-136PREDICTED: ethylene-responsive transcription factor 1B
SwissprotA0A3Q7I5Y91e-50ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A059B5Z01e-158A0A059B5Z0_EUCGR; Uncharacterized protein
STRINGXP_010024972.11e-135(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22752876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-34ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]