PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H04337.1.p
Common NameEUGRSUZ_H04337
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 348aa    MW: 37208.4 Da    PI: 6.8857
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H04337.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.2e-11196240554
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       h+++Er RR+riN+++  L+el+P++      K + a++L + v+Y+k L
  Eucgr.H04337.1.p 196 HSIAERLRRERINERMKALQELVPSC-----NKTDRAAMLDEIVDYVKFL 240
                       99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.89E-17189250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.282191240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-17193251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.68E-13195245No hitNo description
PfamPF000104.3E-9196240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-13197246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MAGSNPQEGL GDEFFEQILA VPPGAYSGGS TPMVLQLGSG RGGVEDGGGR GGGGGLRGMG  60
VMMPLGLNLE QGGLFRHEDV ENSTSASSTT SAINMFQEVL ASKLILVGKR TVRGEKGQDR  120
MMEREAGVHH GNNMTSCLFP AFGQFQTHQS VQPPPPHPPP PQLHPAFLNQ PAVGSLNQPA  180
IRPRARARRG QATDPHSIAE RLRRERINER MKALQELVPS CNKTDRAAML DEIVDYVKFL  240
RLQVKVLSMS RLGGAGAVAQ LVADVPLSSA EGEIIEGGNN QPAWEKWLTD GTEQQVAKLM  300
EEDVGAAMQF LQSKTLCIMP ISLASAIFRT SQPDMPRSIK PESSAPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14754GGRGGGGG
2200205RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H04337.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010025016.11e-179PREDICTED: transcription factor UNE12 isoform X1
SwissprotO227681e-80UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A059B5V40.0A0A059B5V4_EUCGR; Uncharacterized protein
STRINGXP_010025016.11e-178(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.32e-62bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]