PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.H04468.1.p

Common Name

EUGRSUZ_H04468, LOC104415534

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 331aa MW: 37154.2 Da PI: 6.5137

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.H04468.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.4	5.4e-13	113	164	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i A++++k+L+ Eucgr.H04468.1.p 113 QRMTHIAVERNRRKQMNEYLSVLRSLMPES---YIQRGDQASIIGGAINFVKELE 164 79**************************...9****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	4.5E-14	111	168	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.35E-13	111	168	No hit	No description
PROSITE profile	PS50888	15.586	112	163	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.9E-16	112	176	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.7E-10	113	164	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.2E-10	118	169	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MALEAVVFPQ NPLSNYTSRE LYNLLESNWG SFDFGLDRNE HGEFLDYPTE KDFPCGEWNN 60 NSCSSDAGNN TAQCHLNNDN SNDGSSSHRA AAVGRTKRRR TKSRKNKEDI ESQRMTHIAV 120 ERNRRKQMNE YLSVLRSLMP ESYIQRGDQA SIIGGAINFV KELEQKLQLL GVQKEMECLK 180 SDDDHDDKPV SPFSEFFTFH KYNNSNSSNN SSSSPSPSTA TTTTAYYGST DETAAGNKRL 240 SAIADIEVTM VESHANLRIR TKRRPKQILK VVSGLHSLRL TVLHLNVTTV DRVVLYSISV 300 KAEDDCKLTA VDEISSSVYQ IFVQIHEESI *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	124	RMTHIAVERNRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.H04468.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010025161.1	0.0	PREDICTED: transcription factor bHLH94
TrEMBL	A0A059B6K5	0.0	A0A059B6K5_EUCGR; Uncharacterized protein
STRING	XP_010025161.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1116	27	102

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	8e-67	bHLH family protein

Link Out ? help Back to Top
Phytozome	Eucgr.H04468.1.p
Entrez Gene	104415534