PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H04618.1.p
Common NameEUGRSUZ_H04618, LOC104415665
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MIKC_MADS
Protein Properties Length: 207aa    MW: 23754.3 Da    PI: 9.5545
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H04618.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.85.1e-271059251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      ri +ks rqvtfskRr g++KKA EL vLCd++va+++fss+gklye++s
  Eucgr.H04618.1.p 10 RIADKSSRQVTFSKRRGGLMKKARELAVLCDVDVALVVFSSRGKLYEFCS 59
                      899*********************************************96 PP
2K-box56.11.6e-191011712999
             K-box  29 enLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                       e  q  qR l G d+e++s+ +L qLe+qL+++l++ Rs+K++l+le   +lq++ek+++ee ++L+k+++
  Eucgr.H04618.1.p 101 EIVQIVQRYLRGPDIEKMSVTDLVQLEKQLDSALRQTRSRKTKLMLEFKTTLQEQEKMMREERESLKKEIA 171
                       567899**************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.9E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.179161IPR002100Transcription factor, MADS-box
CDDcd002655.44E-39273No hitNo description
SuperFamilySSF554559.55E-32278IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.0E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.97386176IPR002487Transcription factor, K-box
PfamPF014861.8E-14102170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009910Biological Processnegative regulation of flower development
GO:0010048Biological Processvernalization response
GO:0042752Biological Processregulation of circadian rhythm
GO:0005634Cellular Componentnucleus
GO:0043234Cellular Componentprotein complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MGRRKVEIRR IADKSSRQVT FSKRRGGLMK KARELAVLCD VDVALVVFSS RGKLYEFCSG  60
DSFTDILERY QNYLGEAETS KDAKTVEGNG SEDAVYWSHP EIVQIVQRYL RGPDIEKMSV  120
TDLVQLEKQL DSALRQTRSR KTKLMLEFKT TLQEQEKMMR EERESLKKEI ASLVSYDDNV  180
NKVPLGITEM NTTVHHPRLA TLHLLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-21188187MEF2C
5f28_B3e-21188187MEF2C
5f28_C3e-21188187MEF2C
5f28_D3e-21188187MEF2C
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00079ChIP-seqTransfer from AT5G10140Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H04618.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010025294.11e-152PREDICTED: MADS-box protein FLOWERING LOCUS C
TrEMBLA0A059B7T81e-150A0A059B7T8_EUCGR; Uncharacterized protein
STRINGXP_010025294.11e-151(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM9861987
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10140.21e-34MIKC_MADS family protein