PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.H04688.1.p

Common Name

EUGRSUZ_H04688

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GRAS

Protein Properties

Length: 497aa MW: 55691.1 Da PI: 7.0184

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.H04688.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	365.6	7e-112	124	494	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPilk 92 lv+ L++cAeav+ +d++ a+alL++ls a g+++qR+a++f+++L rla +++ + + ++++e+ + e+ al+l +e++P+++ Eucgr.H04688.1.p 124 LVQRLIACAEAVACRDKTHASALLSELSSKALVFGTSFQRVASCFVQGLVDRLALVQPSGAVGIVGQSAREMVmTNEKEEALRLVYEICPYIQ 216 6899*************************************************7766666665555555555888999********* PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGl....QWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180 fsh++aN+ Ilea+ege+ +H++D++++qGl QW +L+ +La+Rp +++ l+i gvg+ +e l+++g++L+++A+ lgv+fef + Eucgr.H04688.1.p 217 FSHFIANESILEAFEGESSIHVVDLGMTQGLphvhQWRNLISSLAKRPgSSSRCLKISGVGN----CEEGLQTIGDKLKHYAKGLGVNFEFLM 305 **************************77777*********666679****....**********************9 PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273 v ++le+l+ e++++ +gE+l++n++lqlh +++es + +vL+++ +lsPk++v+veq+++hn++ Fl rf+eal+yysa+fd+l+a Eucgr.H04688.1.p 306 -VQSNLENLQAEDFSILEGEVLVINSILQLHCVVKESRGALN---SVLQILHKLSPKLLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDALDA 394 .79***************************88877777...8******************************************* PP GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdr 365 lp+ + r+k+E++++++ei+n+v+ceg +r+erhe+ +Wr+r+++aGF+++p++ + ++ak l+k+k +gy++ ee+g+lvlgW+++ Eucgr.H04688.1.p 395 MLPKYDTRRAKIEQFFFAEEIKNIVSCEGPARVERHERIDQWRRRMSRAGFQSAPIK--MLTKAKQWLAKFKvCEGYTIVEEKGCLVLGWNSK 485 ***************************************************96..6899************************** PP GRAS 366 pLvsvSaWr 374 p++++S+W+ Eucgr.H04688.1.p 486 PIIAASCWK 494 ******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.437	98	475	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.4E-109	124	494	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence Send to blast
MSLGYLQPEL YSEDQYDESH VLDLNLSTLE CYSVSSTSSL QSIHRCFLDE TRNCKRLKVE 60 PSIGESIESK EIVHRGCSGM RTNSSNSLRK LQFRDHIWAY TQRYLAVEAM EEAAAAIMQD 120 AMKLVQRLIA CAEAVACRDK THASALLSEL SSKALVFGTS FQRVASCFVQ GLVDRLALVQ 180 PSGAVGIVGQ SAREMVMTNE KEEALRLVYE ICPYIQFSHF IANESILEAF EGESSIHVVD 240 LGMTQGLPHV HQWRNLISSL AKRPGSSSRC LKISGVGNCE EGLQTIGDKL KHYAKGLGVN 300 FEFLMVQSNL ENLQAEDFSI LEGEVLVINS ILQLHCVVKE SRGALNSVLQ ILHKLSPKLL 360 VLVEQDSSHN GPFFLGRFME ALHYYSAIFD ALDAMLPKYD TRRAKIEQFF FAEEIKNIVS 420 CEGPARVERH ERIDQWRRRM SRAGFQSAPI KMLTKAKQWL AKFKVCEGYT IVEEKGCLVL 480 GWNSKPIIAA SCWKCS*

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence Send to blast

MSLGYLQPEL YSEDQYDESH VLDLNLSTLE CYSVSSTSSL QSIHRCFLDE TRNCKRLKVE  60
PSIGESIESK EIVHRGCSGM RTNSSNSLRK LQFRDHIWAY TQRYLAVEAM EEAAAAIMQD  120
AMKLVQRLIA CAEAVACRDK THASALLSEL SSKALVFGTS FQRVASCFVQ GLVDRLALVQ  180
PSGAVGIVGQ SAREMVMTNE KEEALRLVYE ICPYIQFSHF IANESILEAF EGESSIHVVD  240
LGMTQGLPHV HQWRNLISSL AKRPGSSSRC LKISGVGNCE EGLQTIGDKL KHYAKGLGVN  300
FEFLMVQSNL ENLQAEDFSI LEGEVLVINS ILQLHCVVKE SRGALNSVLQ ILHKLSPKLL  360
VLVEQDSSHN GPFFLGRFME ALHYYSAIFD ALDAMLPKYD TRRAKIEQFF FAEEIKNIVS  420
CEGPARVERH ERIDQWRRRM SRAGFQSAPI KMLTKAKQWL AKFKVCEGYT IVEEKGCLVL  480
GWNSKPIIAA SCWKCS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	5e-66	131	493	26	378	Protein SCARECROW
5b3h_A	6e-66	131	493	25	377	Protein SCARECROW
5b3h_D	6e-66	131	493	25	377	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.H04688.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010027286.1	0.0	PREDICTED: DELLA protein GAI
TrEMBL	A0A059B7M3	0.0	A0A059B7M3_EUCGR; Uncharacterized protein
STRING	XP_010027286.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16018	8	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	1e-77	GRAS family protein

Link Out ? help Back to Top
Phytozome	Eucgr.H04688.1.p