PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H04694.1.p
Common NameEUGRSUZ_H04694
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ARR-B
Protein Properties Length: 497aa    MW: 57074.3 Da    PI: 8.8868
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H04694.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like23.89.8e-08204225122
           G2-like   1 kprlrWtpeLHerFveaveqLG 22 
                       k+r++W+ +LH++Fv+av+q+G
  Eucgr.H04694.1.p 204 KARVVWSVDLHQKFVRAVNQIG 225
                       68******************97 PP
2G2-like29.61.6e-092712992755
           G2-like  27 AtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         P +il+lm+v+ Lt+e+v+SHLQk Rl
  Eucgr.H04694.1.p 271 VGPEKILDLMNVPWLTRENVASHLQKSRL 299
                       569***********************998 PP
3Response_reg77.64.5e-26221301109
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                       vl vdD+ + +++l+++l+k  y ev+++  +++al+ll+e++  +D+++ D++mp+mdG++ll+     e++lp+i+++  ge + +++ ++
  Eucgr.H04694.1.p  22 VLAVDDDSTWLKILEKMLKKCSY-EVTTCGLARDALKLLRERKggYDIVISDVNMPDMDGFKLLELVSL-EMDLPVIMMSVDGETSRVKKGVQ 112
                       799********************.***************999999*******************87765.559******************** PP

                       TTESEEEESS--HHHHHH CS
      Response_reg  92 aGakdflsKpfdpeelvk 109
                        Ga d+l Kp+ ++el++
  Eucgr.H04694.1.p 113 HGACDYLPKPMRMKELRN 130
                       ***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.29E-3318144IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23008.9E-4319156No hitNo description
SMARTSM004482.0E-3020132IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.75921136IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.7E-2322131IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.46E-2923136No hitNo description
SuperFamilySSF466892.15E-9202229IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-21202228IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-21271304IPR009057Homeodomain-like
TIGRFAMsTIGR015576.7E-8271299IPR006447Myb domain, plants
SuperFamilySSF466892.15E-9272303IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MMESSKGFSS PRSNGFPTGL RVLAVDDDST WLKILEKMLK KCSYEVTTCG LARDALKLLR  60
ERKGGYDIVI SDVNMPDMDG FKLLELVSLE MDLPVIMMSV DGETSRVKKG VQHGACDYLP  120
KPMRMKELRN IWQHVFRKRV HEIRDIESHE GLEDLQVTKS GYDWLDDGHF YRGEDTSTPG  180
KKRKDLENKH DEKDLTDPSS STKKARVVWS VDLHQKFVRA VNQIGYDGKY EIFCYDLSKA  240
PFFSLTSKLK HTSQYFYSRK DVTCLVCSAE VGPEKILDLM NVPWLTRENV ASHLQKSRLY  300
LSRLQKENDL RISYGGMKHS DLNPQDAARA SSHQNSINFQ QNDATTGNSK FAGNNLLIQN  360
LDSRGNEFHT RGTIITETSG PGISLSLSTL EQEMEFTAFD SITPRSYSRR EIPGIQNLRR  420
IINHINGFRS ITMGSNVQDQ NLPRIIELLL AIIRWLTLFF QLFLFLAFFL SLFFFFLFFF  480
LNFFFLLFGS RRRGPH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1udr_A3e-13201386126CHEY PROTEIN
1udr_B3e-13201386126CHEY PROTEIN
1udr_C3e-13201386126CHEY PROTEIN
1udr_D3e-13201386126CHEY PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H04694.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018717352.10.0PREDICTED: two-component response regulator ORR26
SwissprotQ5N6V81e-117ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLA0A059B8P10.0A0A059B8P1_EUCGR; Uncharacterized protein
STRINGXP_010025369.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80662740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-118response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]