PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.H04834.1.p

Common Name

EUGRSUZ_H04834

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

M-type_MADS

Protein Properties

Length: 177aa MW: 20023.1 Da PI: 7.3479

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.H04834.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	63.2	2.9e-20	17	63	3	49
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 i k qvtfskRr g++KKA+EL++LC++++ +i+fs+ k++ + Eucgr.H04834.1.p 17 IPKKNHLQVTFSKRRSGLFKKASELCTLCGVDIGIIVFSPASKVFSF 63 55677789**********************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	22.567	7	67	IPR002100	Transcription factor, MADS-box
SMART	SM00432	8.5E-29	7	66	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.10E-31	8	76	No hit	No description
SuperFamily	SSF55455	2.09E-24	8	78	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-16	9	29	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.0E-23	16	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-16	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-16	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MAKKPSLGRQ KIAISKIPKK NHLQVTFSKR RSGLFKKASE LCTLCGVDIG IIVFSPASKV 60 FSFGHPEVEF IIERFLAQDP APPDSGECRL IEAHRNANLR DLNGILTQVL EELEAERKRG 120 EALDEMRRES QRQCWWEAPI DELGLCELEQ LGGSMEELKK NVMRWINELM KSENSS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269\|PubMed:18334668}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.H04834.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010027322.1	1e-122	PREDICTED: agamous-like MADS-box protein AGL62
Swissprot	Q9FKK2	1e-52	AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBL	A0A059B7H1	1e-125	A0A059B7H1_EUCGR; Uncharacterized protein
STRING	XP_010027322.1	1e-121	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	2e-48	AGAMOUS-like 62

Link Out ? help Back to Top
Phytozome	Eucgr.H04834.1.p

Publications ? help Back to Top
Xu W, et al. Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds. Plant Cell, 2016. 28(6): p. 1343-60 [PMID:27233529] Figueiredo DD,Batista RA,Roszak PJ,Köhler C Auxin production couples endosperm development to fertilization. Nat Plants, 2015. 1: p. 15184 [PMID:27251719] Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C Auxin production in the endosperm drives seed coat development in Arabidopsis. Elife, 2017. [PMID:27848912] Fiume E,Coen O,Xu W,Lepiniec L,Magnani E Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal. Plant Signal Behav, 2017. 12(8): p. e1339000 [PMID:28613109] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]