PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I00191.1.p
Common NameEUGRSUZ_I001911, LOC104418106
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 205aa    MW: 23284.9 Da    PI: 4.6511
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I00191.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.41.7e-33181391128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       lppGfrF+Ptdeelv ++L++k ++ +  +l  + +++++ ++++PwdL+ k+ ++ ++ yf+++r         +nr+t++gyWk    +++
  Eucgr.I00191.1.p  18 LPPGFRFSPTDEELVLHFLHPKKQQASlSPLYAHlVPDLKSHHHDPWDLHGKALSNGSH-YFYFSRM-------MNNRITENGYWKDLDMEEP 102
                       79********************99999533434459*************9555444444.5554443.......358**************** PP

               NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       v+ + ge +g+kk+L+f+ g+ap+g++t+Wvm+ey+l
  Eucgr.I00191.1.p 103 VFGEAGEIIGMKKSLTFHIGEAPTGQETNWVMQEYHL 139
                       ***********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.54E-3915161IPR003441NAC domain
PROSITE profilePS5100537.78118163IPR003441NAC domain
PfamPF023654.5E-2219139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MRDVKEKEEK DDGKMLKLPP GFRFSPTDEE LVLHFLHPKK QQASLSPLYA HLVPDLKSHH  60
HDPWDLHGKA LSNGSHYFYF SRMMNNRITE NGYWKDLDME EPVFGEAGEI IGMKKSLTFH  120
IGEAPTGQET NWVMQEYHLV SFHELANSTQ EPGSLVLSRV HESKTSHGQS LCSGGDEDSE  180
TDLSYMDEMF MLLDEDLDDI SSGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-28816610171NAC domain-containing protein 19
3swm_B2e-28816610171NAC domain-containing protein 19
3swm_C2e-28816610171NAC domain-containing protein 19
3swm_D2e-28816610171NAC domain-containing protein 19
3swp_A2e-28816610171NAC domain-containing protein 19
3swp_B2e-28816610171NAC domain-containing protein 19
3swp_C2e-28816610171NAC domain-containing protein 19
3swp_D2e-28816610171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I00191.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010027640.11e-150PREDICTED: NAC domain-containing protein 104
TrEMBLA0A059AKH91e-149A0A059AKH9_EUCGR; Uncharacterized protein
STRINGXP_010027640.11e-150(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36742862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.12e-41xylem NAC domain 1