PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I00292.1.p
Common NameEUGRSUZ_I00292
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 175aa    MW: 19048.6 Da    PI: 9.8386
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I00292.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.74.6e-2163112255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp +   + r++lg+f+tae Aa+a+++a+++++ 
  Eucgr.I00292.1.p  63 KYRGVRQRP-WGKWAAEIRDPAK---SSRVWLGTFDTAEAAARAYDEAALQIRR 112
                       8********.**********843...6***********************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-3362121IPR001471AP2/ERF domain
PfamPF008474.2E-1563112IPR001471AP2/ERF domain
SMARTSM003803.7E-3563126IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-2363122IPR016177DNA-binding domain
CDDcd000185.48E-2063122No hitNo description
PROSITE profilePS5103224.72463120IPR001471AP2/ERF domain
PRINTSPR003672.5E-126475IPR001471AP2/ERF domain
PRINTSPR003672.5E-1286102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MPSDTSNLDL LLSVGEVRAG PATVQTAVQT AKADQPTHRA PPVYEYRIPA TTMLRLDPNP  60
RRKYRGVRQR PWGKWAAEIR DPAKSSRVWL GTFDTAEAAA RAYDEAALQI RRNKAKLNFP  120
ENVRLPPLPP PAASEADPAA TRLAVSCESP APSNSNASNC EGQTPVLRLL EKEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-2362123163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A7e-2362123466ATERF1
3gcc_A7e-2362123466ATERF1
5wx9_A3e-22631251477Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I00292.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010027737.13e-54PREDICTED: ethylene-responsive transcription factor ABR1 isoform X1
TrEMBLA0A059AKG01e-122A0A059AKG0_EUCGR; Uncharacterized protein
STRINGXP_010027737.11e-53(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.17e-25ethylene response factor 110