PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I00397.1.p
Common NameEUGRSUZ_I00397
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 146aa    MW: 16864.7 Da    PI: 10.8953
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I00397.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.84.5e-14471423100
                       EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        ++++++ l+ + + +p  f+++h +k+++ +tl+ ++   rsW+vkl   k+s+r     +++GW  F+++  L+ gD +vF+l+++++  +
  Eucgr.I00397.1.p  47 VIEMSPSCLRYCSVNVPAGFMRSHISKSPQFVTLKYMN---RSWSVKL--FKHSERygsGRFSGGWLMFARETFLRRGDACVFELVEKNRVVF 134
                       5678999999**************77766766666555...9999999..5555552224688**********************98888888 PP

                       EEEEE-SS CS
                B3  93 vvkvfrks 100
                        v++fr+s
  Eucgr.I00397.1.p 135 EVSIFRRS 142
                       99999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.4E-2039142IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.26E-1743142IPR015300DNA-binding pseudobarrel domain
CDDcd100171.48E-1544140No hitNo description
PROSITE profilePS5086311.85745142IPR003340B3 DNA binding domain
SMARTSM010191.8E-1146142IPR003340B3 DNA binding domain
PfamPF023622.6E-1147141IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MSIMIICRRL PENSERRASS VFYGSKGLSP PALKMARKFR SVYPTFVIEM SPSCLRYCSV  60
NVPAGFMRSH ISKSPQFVTL KYMNRSWSVK LFKHSERYGS GRFSGGWLMF ARETFLRRGD  120
ACVFELVEKN RVVFEVSIFR RSDYT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-143214535146B3 domain-containing transcription factor VRN1
4i1k_B3e-143214535146B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I00397.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A059AKG91e-101A0A059AKG9_EUCGR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14804415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.12e-16related to vernalization1 1