PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I00399.1.p
Common NameEUGRSUZ_I00399
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 85aa    MW: 9757.4 Da    PI: 10.4128
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I00399.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.84e-133801799
                      E--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                      ++p kf+++h +   +s++++    +++sW  kli   + +++   l +GW  F++a  ++egD++vF+l++rs + l v++fr+
  Eucgr.I00399.1.p  3 SVPVKFMRTHIK---RSMQVVTIKHKNESWPAKLIKfpWDHGK---L-SGWFPFARATSVCEGDVCVFELTKRSPTVLEVSIFRN 80
                      68*****99942...577899899999*******665655542...4.6************************9999******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.0026181IPR003340B3 DNA binding domain
PROSITE profilePS5086310.898181IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-12281IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.43E-12381IPR015300DNA-binding pseudobarrel domain
CDDcd100172.34E-8379No hitNo description
PfamPF023625.0E-10380IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MQSVPVKFMR THIKRSMQVV TIKHKNESWP AKLIKFPWDH GKLSGWFPFA RATSVCEGDV  60
CVFELTKRSP TVLEVSIFRN SDYT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I00399.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018718135.16e-41PREDICTED: B3 domain-containing protein REM19-like
TrEMBLA0A059AL432e-56A0A059AL43_EUCGR; Uncharacterized protein
STRINGXP_010027828.12e-36(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14804415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.17e-10related to vernalization1 1