PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I00400.1.p
Common NameEUGRSUZ_I00400
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 110aa    MW: 12332.4 Da    PI: 10.7606
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I00400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.51.4e-1420105999
                       HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       +  k +  +++ kf++ h +k  +s++++    +  sW vkl   k++g    l++GW  F++a  L+egD++vF+l++ s + l v++fr+
  Eucgr.I00400.1.p  20 Y-IKGSTPSVSTKFMRIH-IK--RSVQVVTLKHKKDSWPVKL--IKSPGDhGRLSQGWFAFARATSLCEGDVCVFELTKPSPTVLEVSIFRN 105
                       3.3444578899999666.33..567788888899*******..5555554579***********************9999999******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-204106IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-185106IPR015300DNA-binding pseudobarrel domain
CDDcd100177.41E-1110104No hitNo description
PROSITE profilePS5086311.01111106IPR003340B3 DNA binding domain
SMARTSM010191.3E-1011106IPR003340B3 DNA binding domain
PfamPF023626.3E-1218105IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MARDFKSKRP MFILVVYPSY IKGSTPSVST KFMRIHIKRS VQVVTLKHKK DSWPVKLIKS  60
PGDHGRLSQG WFAFARATSL CEGDVCVFEL TKPSPTVLEV SIFRNSDST*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I00400.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018718135.17e-76PREDICTED: B3 domain-containing protein REM19-like
TrEMBLA0A059AM592e-74A0A059AM59_EUCGR; Uncharacterized protein
STRINGXP_010027828.12e-59(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14804415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.16e-16related to vernalization1 1