PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.I00402.1.p

Common Name

EUGRSUZ_I00402

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Protein Properties

Length: 104aa MW: 11650.7 Da PI: 10.2176

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.I00402.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	31.2	3.9e-10	31	99	17	90
E--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 +++ kf+++h k +s++++ +++sW kli + +++ l +GW F +a L+egD++vF+l+++s + Eucgr.I00402.1.p 31 SVSVKFMRTHI-K--RSMQVVTIKHKNESWPAKLIKfpWDHGK---L-SGWFPFSRATSLCEGDVCVFELTKQSPT 99 56778888884.2..577888889999*****665655542...4.6******************9876554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.96E-10	26	97	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.9E-9	29	97	IPR015300	DNA-binding pseudobarrel domain

Sequence ? help Back to Top
Protein Sequence Length: 104 aa Download sequence Send to blast
MLVARGCNVP CSAALEIARD FKSKHPTFIS SVSVKFMRTH IKRSMQVVTI KHKNESWPAK 60 LIKFPWDHGK LSGWFPFSRA TSLCEGDVCV FELTKQSPTV LEV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.I00402.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018718135.1	4e-48	PREDICTED: B3 domain-containing protein REM19-like
TrEMBL	A0A059ALD1	2e-70	A0A059ALD1_EUCGR; Uncharacterized protein
STRING	XP_010027828.1	1e-43	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14804	4	15

Link Out ? help Back to Top
Phytozome	Eucgr.I00402.1.p