PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I00406.1.p
Common NameEUGRSUZ_I00406
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 200aa    MW: 23008.4 Da    PI: 8.7499
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I00406.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3512.6e-16201112100
                       EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                       fk+   sd+l+sg l++pk+f++++g+    + +l l+      W v+l  +k++gr+++ kGW++F +   ++ g  +vF+l+g s f  +v
  Eucgr.I00406.1.p  20 FKII-LSDTLQSGKLIIPKRFVAKYGNR--LPNQLLLKVAGDGNWPVEL--EKCDGRVWICKGWRNFMDYYSIDHGHLIVFRLEGASFF--HV 105
                       4444.59******************966..7889***************..********************************998888..** PP

                       EEE-SS CS
                B3  95 kvfrks 100
                        +f+ks
  Eucgr.I00406.1.p 106 LIFDKS 111
                       ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.1E-2415111IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-2315111IPR015300DNA-binding pseudobarrel domain
CDDcd100173.88E-1917109No hitNo description
PROSITE profilePS5086312.91518111IPR003340B3 DNA binding domain
SMARTSM010198.5E-1419111IPR003340B3 DNA binding domain
PfamPF023621.3E-1220110IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MTNVSYSWKR YEPLESPHFF KIILSDTLQS GKLIIPKRFV AKYGNRLPNQ LLLKVAGDGN  60
WPVELEKCDG RVWICKGWRN FMDYYSIDHG HLIVFRLEGA SFFHVLIFDK SATEIEYPQK  120
PVAPEKLLDP EVVEIDDVST ELGEHIISPR ERRELKSPLW SASPEGKGSH SGDRRTLKLK  180
KNMRAYCSSR DYGGMIYFP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I00406.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018718145.11e-142PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A059AKX01e-146A0A059AKX0_EUCGR; Uncharacterized protein
STRINGXP_010066143.19e-41(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-22B3 family protein