PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I00407.1.p
Common NameEUGRSUZ_I00407
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 79aa    MW: 9029.35 Da    PI: 8.7284
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I00407.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.71.2e-1419764299
                      TS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3 42 sgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                      +grsW+vk+   ++++     +++GW  F+++n L +gD++vF++++++   ++v++fr+
  Eucgr.I00407.1.p 19 QGRSWTVKF--FNYPNYycGKFQSGWAMFASDNSLSAGDVCVFEMIKKTPLVFKVSIFRH 76
                      57*******..444444112389**********************999999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.661177IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.5E-141777IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-121977IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-111976IPR003340B3 DNA binding domain
CDDcd100172.60E-122075No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MKNHIKESLV VEDSTFEFQG RSWTVKFFNY PNYYCGKFQS GWAMFASDNS LSAGDVCVFE  60
MIKKTPLVFK VSIFRHTG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I00407.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018718145.11e-50PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A059AL476e-52A0A059AL47_EUCGR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14804415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-08B3 family protein