PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.I00413.1.p

Common Name

EUGRSUZ_I00413

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Nin-like

Protein Properties

Length: 171aa MW: 19723.7 Da PI: 9.2474

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.I00413.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	63.8	2.9e-20	78	124	4	50
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 +++l d+ yF+l i++A+ L +c+Tv+K+iCR+ G+ RWP+Rki+ Eucgr.I00413.1.p 78 KMTLADVGGYFHLLIEKACERLHLCPTVVKKICRKGGVGRWPYRKIQ 124 7999******************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	14.811	66	146	IPR003035	RWP-RK domain
Pfam	PF02042	9.0E-18	78	124	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MVSHAILDTQ HNPGAVPSNG EDRYQMFDFC KKSIQNVKDF LQQYSVCIGI DFNGNVNANY 60 FQLPLPPTVS VQRERAGKMT LADVGGYFHL LIEKACERLH LCPTVVKKIC RKGGVGRWPY 120 RKIQCIERKI LELREQLKRE DEPKRSRTQA EIDEWQRNLD KIRYGVARTD *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.I00413.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018718902.1	2e-96	PREDICTED: protein RKD5 isoform X2
TrEMBL	A0A059AM65	1e-125	A0A059AM65_EUCGR; Uncharacterized protein
STRING	XP_010024146.1	1e-110	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4076	23	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	7e-10	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Eucgr.I00413.1.p