PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I00422.1.p
Common NameEUGRSUZ_I00422, LOC104418258
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 350aa    MW: 39253.2 Da    PI: 6.0542
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I00422.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.55.3e-21150199255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  Eucgr.I00422.1.p 150 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDEAAYKLRG 199
                       59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.73E-33149207No hitNo description
PROSITE profilePS5103223.103150207IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-32150209IPR001471AP2/ERF domain
SMARTSM003801.8E-36150213IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-23150209IPR016177DNA-binding domain
PfamPF008471.0E-14151199IPR001471AP2/ERF domain
PRINTSPR003673.3E-11151162IPR001471AP2/ERF domain
PRINTSPR003673.3E-11173189IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MAAAVEFYNS NSDPIREEFM KALEPFMKSV SPVSSPLSSL SSCDSVFPQQ QPNLNPDLCS  60
SWILNPMGLE QSGSIGLNRL SHSQIQHIQD EMLLRRQNQE LWLASAMKSP LQHEKFDQCR  120
HQNHHGSPHL LRPKALPMKR VGVPPKPNKL YRGVRQRHWG KWVAEIRLPK NRTRLWLGTF  180
DTAEEAALAY DEAAYKLRGD FARLNFPRSR DGGSYLCDYN PLHSSVCAKL QAICQSLAAN  240
SQKQGKTGEP CFFPDRAMET FDAATEADEA IFFKVALKNE YDADLAYPEQ DYKVENSVSS  300
PAFSDESSVA GSSSPESNLA LLGFPPSQFE IENFYLEKYP SAEIDWAAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20149213469ATERF1
3gcc_A2e-20149213469ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I00422.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010027841.10.0PREDICTED: ethylene-responsive transcription factor ERF060
TrEMBLA0A059AL600.0A0A059AL60_EUCGR; Uncharacterized protein
STRINGXP_010027841.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.16e-54ERF family protein