PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.I00465.1.p

Common Name

EUGRSUZ_I00465

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Protein Properties

Length: 116aa MW: 13061.3 Da PI: 10.4824

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.I00465.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	37.9	3.1e-12	28	111	1	90
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f++v ps+v +s +++ kf+++h + +s++++ +++sW kli + +++ l +GW F++a L+egD++vF+l++rs + Eucgr.I00465.1.p 28 FISVAYPSYVKNST-ASVSVKFMRTHIK---RSMQVVTIKHKNESWPAKLIKfpWDHGK---L-SGWFPFARATSLCEGDVCVFELTKRSPT 111 66777888888886.999****9942...577899899999***665655542...4.6******************9987665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.9E-14	20	109	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.08E-13	21	109	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	8.966	27	115	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.0E-9	28	111	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 116 aa Download sequence Send to blast
MLVARRCNVP CSAALEMARD FKSKHPTFIS VAYPSYVKNS TASVSVKFMR THIKRSMQVV 60 TIKHKNESWP AKLIKFPWDH GKLSGWFPFA RATSLCEGDV CVFELTKRSP TVLEV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.I00465.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018718135.1	5e-59	PREDICTED: B3 domain-containing protein REM19-like
TrEMBL	A0A059ALH8	3e-80	A0A059ALH8_EUCGR; Uncharacterized protein
STRING	XP_010027828.1	1e-53	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM35253	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49480.1	5e-09	related to vernalization1 1

Link Out ? help Back to Top
Phytozome	Eucgr.I00465.1.p