PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I00564.1.p
Common NameEUGRSUZ_I00564
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family AP2
Protein Properties Length: 504aa    MW: 54454.1 Da    PI: 7.0891
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I00564.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.79.2e-11221277155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++gr++A+++d  +       rk  + g ++ +++Aa+a++ a++k++g
  Eucgr.I00564.1.p 221 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEDKAARAYDLAALKYWG 277
                       57*******************4444.2344336655.7799999*************98 PP
2AP250.26.4e-16320371155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Eucgr.I00564.1.p 320 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 371
                       57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-8221277IPR001471AP2/ERF domain
CDDcd000181.82E-18221287No hitNo description
SuperFamilySSF541711.11E-14221287IPR016177DNA-binding domain
SMARTSM003805.1E-22222291IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-12222286IPR001471AP2/ERF domain
PROSITE profilePS5103217.346222285IPR001471AP2/ERF domain
PRINTSPR003673.3E-6223234IPR001471AP2/ERF domain
PfamPF008472.8E-10320371IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-18320380IPR016177DNA-binding domain
CDDcd000182.73E-11320379No hitNo description
SMARTSM003807.3E-31321385IPR001471AP2/ERF domain
PROSITE profilePS5103219.177321379IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-18321379IPR001471AP2/ERF domain
PRINTSPR003673.3E-6361381IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MAPATNWLSF SLSPVEMHPQ LIVPPFDLTS ATSSSSSTSS SSHYLIDSFY GGHGWDNPKP  60
QLLFADIASA PPKLEDFLRD SSTTEDSSLT THIYDRSSSH YFDDGHGHGG HHHHHHHDLN  120
AIAGFQTISA NSGSEVDDSG SMGRATQAHL AEFNRHSTES AGTELGFAAA GGGGGALSLG  180
VVVTAAAASQ PQSTEKAAVA VTAADSDGSK KINDSFGQRT SIYRGVTRHR WTGRYEAHLW  240
DNSCRREGQA RKGRQGGYDK EDKAARAYDL AALKYWGPTA TTNFPVSNYA KELEEMKHVT  300
KQEFIASLRR KSSGFSRGAS IYRGVTRHHQ QGRWQARIGR VAGNKDLYLG TFATEEEAAE  360
AYDIAAIKFR GLNAVTNFEM NRYDVEAIAN STLPIGGAAK RLKLNLEAEQ KPCLDMIHQQ  420
PTPRTGGGNI SFSAIQPFPT IPCGIPFDTS TALYNPNFFH HLQPNIGSSA IANSPSSTST  480
IPTPAVTAVP QTADFFIWPH QSY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I00564.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010027962.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU21e-165AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A059AKU20.0A0A059AKU2_EUCGR; Uncharacterized protein
STRINGXP_010027962.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33332765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-140AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]