PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I00634.1.p
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 365aa    MW: 40020.7 Da    PI: 8.202
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I00634.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.5e-12185231455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h  +Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  Eucgr.I00634.1.p 185 DHILAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYLKQLQ 231
                       5899***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.663181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-10185231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-17185244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-17186247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.42E-13186235No hitNo description
SMARTSM003531.0E-14187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MDDFNNFIHQ YNTSSPDNGG LMTEEIATAL GETNNKNSNL QNCLYPSLHP SYPPFTSQNS  60
ITSTTTTTTC SDSSSERSWT GHERPAKLLK ASTCGSSSSS HLFSFSTSAS MASNLQQQVY  120
GNLQNPSATP KKEAVSQEYN MTFGSLSSGG VHPNNQNSSQ NSSPKADLGI KRAYPVSRTP  180
SSAQDHILAE RKRREKLSQR FIALSAIVPG LKKMDKASVL GDAIKYLKQL QERVKSLEEQ  240
SKKKTMESAV FVKKYQLSND DDGSSCDESS DGYSADQALP EIEARVADKD VLIRIHCENQ  300
KAIAARIFGE VEKLNLSIVQ SNVVRFGSST LDITIVAQMD DGFSLTVKEI VKNLRSSLLK  360
FWFR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-13185240863Transcription factor MYC2
5gnj_B2e-13185240863Transcription factor MYC2
5gnj_E2e-13185240863Transcription factor MYC2
5gnj_F2e-13185240863Transcription factor MYC2
5gnj_G2e-13185240863Transcription factor MYC2
5gnj_I2e-13185240863Transcription factor MYC2
5gnj_M2e-13185240863Transcription factor MYC2
5gnj_N2e-13185240863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189194ERKRRE
2190195RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I00634.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010028032.10.0PREDICTED: transcription factor bHLH18
SwissprotQ9T0723e-68BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A059ALG61e-155A0A059ALG6_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010028032.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.18e-66bHLH family protein