PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.I00868.1.p

Common Name

EUGRSUZ_I00868

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

FAR1

Protein Properties

Length: 211aa MW: 24081.5 Da PI: 6.5053

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.I00868.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.8	1.1e-20	40	127	3	91
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 Y +YA GF vrk + ++ +++++t+rtfvC++eg++ ++++++++++ +r r+gC a++k k ++++++ev++ ++eHnH+++p Eucgr.I00868.1.p 40 YVAYAIIKGFGVRKGSLVRN-TKRKVTRRTFVCNCEGYSINSSDEEKEKKFERFDIRCGCLAHIKFKVDNNDVFEVIEYNSEHNHAFVP 127 99**************99.5556***********99999999999********************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-18	40	127	IPR004330	FAR1 DNA binding domain
Pfam	PF02990	2.7E-7	142	189	IPR004240	Nonaspanin (TM9SF)

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MAESELETSH LVHVMRDMEK DFEFAIGMVF SNELEAYNKY VAYAIIKGFG VRKGSLVRNT 60 KRKVTRRTFV CNCEGYSINS SDEEKEKKFE RFDIRCGCLA HIKFKVDNND VFEVIEYNSE 120 HNHAFVPENQ RHMIRCGRIM SETCKGVLEV ACAKKLTSEE VSQIQAAIKQ FYIFQMYCDD 180 LPIWGYKGKV TNEAQGENVL FGDVGAIPGN *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.I00868.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010070164.1	3e-81	PREDICTED: protein FAR1-RELATED SEQUENCE 9 isoform X1
Refseq	XP_018716555.1	3e-81	PREDICTED: protein FAR1-RELATED SEQUENCE 9 isoform X1
Refseq	XP_018716556.1	3e-81	PREDICTED: protein FAR1-RELATED SEQUENCE 9 isoform X1
Refseq	XP_018716557.1	2e-81	PREDICTED: protein FAR1-RELATED SEQUENCE 9 isoform X2
Refseq	XP_018716558.1	1e-81	PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X3
TrEMBL	A0A059ANC4	1e-155	A0A059ANC4_EUCGR; Uncharacterized protein
STRING	XP_010028196.1	4e-86	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14997	3	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	8e-09	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Eucgr.I00868.1.p