PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I00929.1.p
Common NameEUGRSUZ_I00929
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 433aa    MW: 46303 Da    PI: 7.1413
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I00929.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.51.4e-351382302103
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y++++d++++++isw e+g++fvv+++ efak++Lp+ Fkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+kell
  Eucgr.I00929.1.p 138 FLTKTYQLVDDPATDDVISWGESGRTFVVWKTAEFAKDLLPSSFKHNNFSSFVRQLNTYGFRKIVPDK---------WEFANDRFQRGQKELL 221
                       9****************************************************************999.........**************** PP

                       XXXXXXXXX CS
      HSF_DNA-bind  95 ekikrkkse 103
                       ++i+r+ks+
  Eucgr.I00929.1.p 222 SEIRRRKSA 230
                       ******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.9E-37129221IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.26E-33134227IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.2E-59134227IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.8E-31138227IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-19138161IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-19176188IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340177201IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-19189201IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MMVGRLYCNP QFPKKRILFS SLPLFSPLFS HLCLSIDEGS YVQPWKQLIH EGRELATAWS  60
TSLGSTAGAG SSSPLSFSLV APSDHHQTLQ SPLSLSLSLS LSLSLFYSLL KLQFLLPGRG  120
KSGTDDKGMA QRSAPAPFLT KTYQLVDDPA TDDVISWGES GRTFVVWKTA EFAKDLLPSS  180
FKHNNFSSFV RQLNTYGFRK IVPDKWEFAN DRFQRGQKEL LSEIRRRKSA ATPPNPPASG  240
AAKSAAGAAG GQASPESSGE DMGSTSTSSP ADSKNAGSVE TAAVAAAAAA TATATAAQFA  300
DLTGENEKLR RDNEALNSEL AQAKKHCDEL VAFLTECLKV APDQIDHIVR RGCRGAAAFA  360
AAGDGADGVD RDDDDDDEKA AAEVDGEKST KLFGVWLNGK GKEARKRARE DKVGPVGMEF  420
CQPLMKTSKV CN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-2512923211125Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I00929.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010028256.10.0PREDICTED: heat shock factor protein HSF24
SwissprotP223358e-91HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A059AMJ80.0A0A059AMJ8_EUCGR; Uncharacterized protein
STRINGXP_010028256.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61012546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.19e-76heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]