PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.I01069.1.p

Common Name

EUGRSUZ_I01069

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 374aa MW: 41114.7 Da PI: 4.7909

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.I01069.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.2	3.9e-10	295	335	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq Eucgr.I01069.1.p 295 RKRRERINERLRMLQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 335 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.27E-14	285	350	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.161	285	334	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.5E-13	290	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.3E-11	291	340	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.84E-12	294	339	No hit	No description
Pfam	PF00010	2.0E-7	295	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
METFGANSEV EWGSISGMYF TEESDLMAQW FDKCSLPAEL YAGSHFALHS AYLPTYESFN 60 LAGVDGSAFC TSDTLYPNSH SSSPHDEFHS SVSSFLFPSS GDSNYHLSDL NPILVTSSSS 120 LCNELSMSNL RQTGSCLIEG DNSPNREMSE VDESHGSPRE MAFMENSLRL KWGSEILPVI 180 SAAKDDKDDS NDSSRKRSRN LGEVSKSCTF PKITSLHPGF CFFDDLLKSH EEAKGCTGGQ 240 ISSTCFSEDD SSSSLELNRG AASSMSPKET ASLSPNGKTR ASRGSATDPQ SLYARKRRER 300 INERLRMLQN LVPNGTKVDI STMLEEAVQY VKFLQLQIKL LSSDDLWMYA PIAYNGMDIG 360 LDLKLIQPSL LHK*

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

METFGANSEV EWGSISGMYF TEESDLMAQW FDKCSLPAEL YAGSHFALHS AYLPTYESFN  60
LAGVDGSAFC TSDTLYPNSH SSSPHDEFHS SVSSFLFPSS GDSNYHLSDL NPILVTSSSS  120
LCNELSMSNL RQTGSCLIEG DNSPNREMSE VDESHGSPRE MAFMENSLRL KWGSEILPVI  180
SAAKDDKDDS NDSSRKRSRN LGEVSKSCTF PKITSLHPGF CFFDDLLKSH EEAKGCTGGQ  240
ISSTCFSEDD SSSSLELNRG AASSMSPKET ASLSPNGKTR ASRGSATDPQ SLYARKRRER  300
INERLRMLQN LVPNGTKVDI STMLEEAVQY VKFLQLQIKL LSSDDLWMYA PIAYNGMDIG  360
LDLKLIQPSL LHK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.I01069.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010028365.1	0.0	PREDICTED: transcription factor bHLH84
TrEMBL	A0A059ANW8	0.0	A0A059ANW8_EUCGR; Uncharacterized protein
STRING	XP_010028365.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2834	26	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14760.1	2e-46	bHLH family protein

Link Out ? help Back to Top
Phytozome	Eucgr.I01069.1.p