PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.I01153.1.p

Common Name

EUGRSUZ_I01153

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

ERF

Protein Properties

Length: 276aa MW: 30320.6 Da PI: 7.9462

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.I01153.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.8	7.4e-20	124	174	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr+++ +g+W+AeIrdp+ r r++lg+f ta+eAa+a+++a+ +++g Eucgr.I01153.1.p 124 KKYRGVRQRP-WGKWAAEIRDPR----RaVRVWLGTFNTADEAARAYDKAATEFRG 174 59******.******82....48**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.26E-31	124	183	No hit	No description
PROSITE profile	PS51032	24.816	125	182	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	5.7E-32	125	183	IPR001471	AP2/ERF domain
SMART	SM00380	8.6E-37	125	188	IPR001471	AP2/ERF domain
Pfam	PF00847	1.4E-13	125	174	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.33E-22	125	183	IPR016177	DNA-binding domain
PRINTS	PR00367	1.2E-11	126	137	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.2E-11	148	164	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MRRLRLPESA GQPPSPPPRR LTHEQELSIM VAALKNVVSG STPSDPVPYL PPTSASATTA 60 GDNYYWGSDF VALSDLETCQ VCRISGCLGC NFFTPVADQA DDRNSSGNST KKRQSSSSRV 120 AGKKKYRGVR QRPWGKWAAE IRDPRRAVRV WLGTFNTADE AARAYDKAAT EFRGARAKLN 180 FPHEDHSLLL PPPPPPPPAP LPQRQDPMAS SSDNNSSAMR SNSEENKGKG KVETEADDFW 240 NTFNNDEMER QWTMWMDMGG DSSDSNGPAV RSFDS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	8e-23	125	184	14	74	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.I01153.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018718322.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF109
TrEMBL	A0A059AMI4	0.0	A0A059AMI4_EUCGR; Uncharacterized protein
STRING	XP_010030650.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5469	24	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34410.1	2e-34	redox responsive transcription factor 1

Link Out ? help Back to Top
Phytozome	Eucgr.I01153.1.p