PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I01213.1.p
Common NameEUGRSUZ_I01213, LOC104420533
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 278aa    MW: 32244.1 Da    PI: 5.0644
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I01213.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.22.3e-161198194
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                      ffk+       +s+r+ +p+ f+++ +g+   + ++ l+++ gr+W vk+  +   +  ++++GW+eFv++n ++++D +vF++++   f+ v+
  Eucgr.I01213.1.p 11 FFKAYR--PEYSSQRMHVPRAFLAQLDGP--LPGEILLRHRMGRQWHVKV--TLEAQDAYFEDGWQEFVRENLVETNDYMVFSYQSPGVFRVVI 98
                      677774..44556679*******999988..6779***************..88888899***********************98766664443 PP
2B334.63.3e-111862591087
                       HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       +l+s++l++p++ + ++++k   ++ + + d++gr+W+ +++++  + r+++t GW   ++ n+Lk +D ++ +l ++
  Eucgr.I01213.1.p 186 ALRSSCLYVPRSVLIDYELK--LPQAVLFHDPTGRTWRGTVKVWTDR-RTWIT-GWGALCRHNNLKINDRCICELLEE 259
                       567788***********999..7779***************989887.56788.******************997654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-215104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.39E-216104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.5499102IPR003340B3 DNA binding domain
CDDcd100177.49E-15999No hitNo description
SMARTSM010199.9E-1111102IPR003340B3 DNA binding domain
PfamPF023622.2E-141198IPR003340B3 DNA binding domain
SuperFamilySSF1019361.79E-18173273IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.1E-16174273IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.248177275IPR003340B3 DNA binding domain
CDDcd100176.21E-11178272No hitNo description
SMARTSM010191.4E-5180275IPR003340B3 DNA binding domain
PfamPF023628.9E-9186259IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MENTRRKIPD FFKAYRPEYS SQRMHVPRAF LAQLDGPLPG EILLRHRMGR QWHVKVTLEA  60
QDAYFEDGWQ EFVRENLVET NDYMVFSYQS PGVFRVVIYG HSACEKKECA LPGEVGEGSE  120
VQEHDSDDDD EDYNEEEQEE EEDEGRSKRS KKEGNVEERK AANEDPTNVK RYIDLKNPYF  180
VTVVQALRSS CLYVPRSVLI DYELKLPQAV LFHDPTGRTW RGTVKVWTDR RTWITGWGAL  240
CRHNNLKIND RCICELLEEN GVTDRIIKVH IIGGNST*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I01213.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018718139.10.0PREDICTED: B3 domain-containing protein At4g34400
TrEMBLA0A059ANK80.0A0A059ANK8_EUCGR; Uncharacterized protein
STRINGXP_010030660.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60130.23e-21B3 family protein