PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I01218.1.p
Common NameEUGRSUZ_I01218
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 375aa    MW: 41694 Da    PI: 5.211
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I01218.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.31.6e-1918107198
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       f+k++++s+v++  +l lp +f++ h+  +++++t+tlede+g ++ v++i++k+     l++GWk+F +a +L egD++vF+l++ s f  +
  Eucgr.I01218.1.p  18 FLKTMVRSNVTTGFWLHLPMPFCKLHM--PRNNITVTLEDENGDEYPVNYIVDKTA----LSAGWKKFSSARELMEGDVLVFQLVRASVF--K 102
                       89*********************9997..56889****************888887....*************************99999..8 PP

                       EEEE- CS
                B3  94 vkvfr 98 
                       v+++r
  Eucgr.I01218.1.p 103 VHIVR 107
                       88876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-2112108IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-2413108IPR015300DNA-binding pseudobarrel domain
CDDcd100171.10E-2716107No hitNo description
SMARTSM010197.4E-2218109IPR003340B3 DNA binding domain
PfamPF023627.6E-1718108IPR003340B3 DNA binding domain
PROSITE profilePS5086313.77518109IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MERAEDFRAN LPAEIPSFLK TMVRSNVTTG FWLHLPMPFC KLHMPRNNIT VTLEDENGDE  60
YPVNYIVDKT ALSAGWKKFS SARELMEGDV LVFQLVRASV FKVHIVRGNN SQGVFGLDAS  120
RKQNDSENRM DKEVIPNEKT PSSGPVSQDV SPDNAQSKSL MVLDTNPPCT PDQPGKLGDE  180
IGPDATHGTR LSNSISAIDC GEATSNGSLT VLVSGTAIDS DLSEYQRTRY LELCSSQNGF  240
LHDNLLKSIN YKLAAEMISE TVNIADAIKA SNLSTSRADL EMWDKTLEGF ELLGMKVGFL  300
RARLDQIKNV ASELERYRDA ENKQAAVQEE MRTVQVRLSK LKKLKKRLDA DIESLKTNAE  360
RHEHVFQEEA SAPW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1340347LKKLKKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I01218.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010028536.10.0PREDICTED: B3 domain-containing protein Os01g0234100
RefseqXP_018718479.10.0PREDICTED: B3 domain-containing protein Os01g0234100
TrEMBLA0A059AMR80.0A0A059AMR8_EUCGR; Uncharacterized protein
STRINGXP_010028536.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM167171012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-31B3 family protein