PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.I01308.1.p

Common Name

EUGRSUZ_I01308, LOC104418869

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

SRS

Protein Properties

Length: 221aa MW: 24277.8 Da PI: 7.6997

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.I01308.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	182.1	2.3e-56	13	155	4	153
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaes 96 +++CqdCGnqak+dC+++RCRtCCks+gf+C+thvkstWvpa++r +r+qq+++ ++ ++ +++r+ + ++ + t+ + + Eucgr.I01308.1.p 13 SSSRCQDCGNQAKRDCEYRRCRTCCKSKGFHCQTHVKSTWVPAYRRHQRHQQEQQHQHL----LNSVPVHQQRSIQPQNPKRHRDTS---TFP 98 5679******************************************98887665333....344555555655333333333333...334 PP DUF702 97 kkeletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGle 153 +e +lP+evss+a frcvrvs dd + e++aYqt+v+igGh fkGiLydqG++ Eucgr.I01308.1.p 99 GLGTE-GNLPAEVSSTATFRCVRVSIEDDdAAEHYAYQTSVNIGGHAFKGILYDQGPD 155 44444.56************9888845566********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.4E-55	14	155	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.0E-27	17	58	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	4.0E-23	106	154	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MMMMRGQSGM STSSSRCQDC GNQAKRDCEY RRCRTCCKSK GFHCQTHVKS TWVPAYRRHQ 60 RHQQEQQHQH LLNSVPVHQQ RSIQPQNPKR HRDTSTFPGL GTEGNLPAEV SSTATFRCVR 120 VSIEDDDAAE HYAYQTSVNI GGHAFKGILY DQGPDTCYGT AAGESSSGDP TALPSNNDDN 180 NPAICTLASA SAPEESIYPC SYPFPLSASI SGTHYIFPKS *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.I01308.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010028633.1	1e-166	PREDICTED: protein SHI RELATED SEQUENCE 3 isoform X1
TrEMBL	A0A059ANI6	1e-165	A0A059ANI6_EUCGR; Uncharacterized protein
STRING	XP_010028633.1	1e-166	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9188	26	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	5e-45	SHI-related sequence 5

Link Out ? help Back to Top
Phytozome	Eucgr.I01308.1.p
Entrez Gene	104418869