PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I01328.1.p
Common NameEUGRSUZ_I01328, LOC104418881
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family DBB
Protein Properties Length: 212aa    MW: 23365.4 Da    PI: 6.495
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I01328.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.23.4e-08333434
          zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                      ++C+ +e+  +++fC  ++  lC+ C ++ H
  Eucgr.I01328.1.p  3 TICDVCENAAAIFFCAADEAALCRACDEKVH 33
                      68*******9******************998 PP
2zf-B_box26.41.4e-085291237
          zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                      e ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  Eucgr.I01328.1.p 52 EVQRCDICENAPAFFYCEIDGSSLCLQCDMLVHVGgkrtH 91
                      779***************************9996544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.3E-9147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.139147IPR000315B-box-type zinc finger
CDDcd000212.23E-7345No hitNo description
PfamPF006431.0E-6334IPR000315B-box-type zinc finger
SMARTSM003361.6E-115196IPR000315B-box-type zinc finger
PROSITE profilePS501199.1015196IPR000315B-box-type zinc finger
PfamPF006431.4E-65291IPR000315B-box-type zinc finger
CDDcd000212.19E-75584No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MRTICDVCEN AAAIFFCAAD EAALCRACDE KVHLCNKLAS RHVRVGLADP SEVQRCDICE  60
NAPAFFYCEI DGSSLCLQCD MLVHVGGKRT HGRYLLLRQR VEFPGDKPGR LESQTPNQNE  120
VKREKDQPHK LAMKEVQQNH RASPVPVGDA ISSGEGKMQD KMIDLNSRPQ RTKGQTSMNE  180
DMDVTNGSNL ESAGVVPVGS FDRQPEMKQS T*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I01328.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010028649.11e-157PREDICTED: B-box zinc finger protein 19 isoform X2
SwissprotC0SVM58e-84BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A059ANP01e-156A0A059ANP0_EUCGR; Uncharacterized protein
STRINGXP_010028649.11e-157(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21682469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.11e-72DBB family protein