PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I01334.1.p
Common NameEUGRSUZ_I01334, LOC104418887
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family BBR-BPC
Protein Properties Length: 315aa    MW: 35273.3 Da    PI: 10.2103
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I01334.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind316.21e-9613141301
         GAGA_bind   1 mdddgsre..rnkgyye.................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkal 74 
                       mdd g++   r+k  y                  ++++l+  +++++m ++ e++++i+er+ a +++kaa+ +rd+af qr++al er+kal
  Eucgr.I01334.1.p   1 MDDGGQHGnhRHKVEYPyklmhtlwnmapqhqmkEKNALA--MNQKIMNILREKEQAIQERKDAEAQTKAAIGARDEAFRQREEALVERDKAL 91 
                       6777765446777744455888888888543331223333..899************************************************ PP

         GAGA_bind  75 verdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpk...ekk 163
                       +erdn+ +al++ en++++++    +  +g k +++    s  ++++       + ++++a+pi++ + +a + ++ k+++++k      +++
  Eucgr.I01334.1.p  92 MERDNARAALQYWENAINFTM--VGGNQHGLKRVHHPPY-SPADIAE---AlNADVRITDAFPISSITADAIKPRQGKRSKEGKGIAskgSST 178
                       ***************977655..3344456666666665.2233333...3345788899999999999988888777666665443000334 PP

         GAGA_bind 164 akkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRia 256
                       ++k k+ +e+   +v+  s+ ++++++++s d+ ln v ++ st+PvPvCsCtG++r CYkWGnGGWqS+CCttt+S+yPLP+ +++r+aR++
  Eucgr.I01334.1.p 179 QRKGKRVGEDL--NVQVLSHAKKVRSKWDSADVCLNLVVFNGSTMPVPVCSCTGIPRHCYKWGNGGWQSSCCTTTLSMYPLPQIPHKRHARVS 269
                       44555544444..4444444488********************************************************************** PP

         GAGA_bind 257 grKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                       grKmS+++f+klL++LaaeG+dls p+DLkd+WAkHGtn+++ti+
  Eucgr.I01334.1.p 270 GRKMSGSVFTKLLSRLAAEGHDLSIPLDLKDYWAKHGTNRYITIK 314
                       ********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062171.7E-921314IPR010409GAGA-binding transcriptional activator
SMARTSM012265.9E-1211314IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MDDGGQHGNH RHKVEYPYKL MHTLWNMAPQ HQMKEKNALA MNQKIMNILR EKEQAIQERK  60
DAEAQTKAAI GARDEAFRQR EEALVERDKA LMERDNARAA LQYWENAINF TMVGGNQHGL  120
KRVHHPPYSP ADIAEALNAD VRITDAFPIS SITADAIKPR QGKRSKEGKG IASKGSSTQR  180
KGKRVGEDLN VQVLSHAKKV RSKWDSADVC LNLVVFNGST MPVPVCSCTG IPRHCYKWGN  240
GGWQSSCCTT TLSMYPLPQI PHKRHARVSG RKMSGSVFTK LLSRLAAEGH DLSIPLDLKD  300
YWAKHGTNRY ITIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I01334.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010028658.10.0PREDICTED: protein BASIC PENTACYSTEINE4 isoform X1
RefseqXP_018718766.10.0PREDICTED: protein BASIC PENTACYSTEINE4 isoform X1
RefseqXP_018718768.10.0PREDICTED: protein BASIC PENTACYSTEINE4 isoform X1
SwissprotQ8S8C61e-117BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA0A059ANB00.0A0A059ANB0_EUCGR; Uncharacterized protein
STRINGXP_010028658.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40902659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-119basic pentacysteine 4