PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.I01547.1.p

Common Name

EUGRSUZ_I01547, LOC104419060

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

FAR1

Protein Properties

Length: 794aa MW: 90639.3 Da PI: 6.514

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.I01547.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	98.7	6.2e-31	86	177	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk++++gkw+v+ ++ HnHel+p Eucgr.I01547.1.p 86 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKASLSVKMQDSGKWVVSGFVRAHNHELVP 177 9*************************************998888545677889*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-29	86	177	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.6E-32	298	390	IPR018289	MULE transposase domain
Pfam	PF04434	1.8E-12	566	612	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.239	578	614	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.2E-9	589	616	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 794 aa Download sequence Send to blast
MENEVIEFDI GLGGGVGSSG REVDDDGVDI EHPVDDEDMI DSPQNISGGG GFGGGSGEIY 60 LPEGDLLDLE PYEGMEFESE EAAKAFYNSY ARRVGFSTRV SSSRRSRRDG AIIQRQFVCA 120 KEGFRNLNEK RTKDREIKRP RTITRVGCKA SLSVKMQDSG KWVVSGFVRA HNHELVPPDQ 180 VHCLRSHRQI SGPAKTLIDT LQAAGLGPRR IMSALIKEYG GISKVGFTEV DCRNYMRNNR 240 QRSLEGDIQL LLDYLKQMHA ENANFFYAVQ NDEDQSMCNV VWADSRSRMN YTYFGDTVTF 300 DTTYRSNRYR LPFAPFTGVN HHGQPILFGC AFMINESESS FVWLFKTWLM AMSGRPPVSI 360 TTDHDTVVGS AIAQVFPETR HRFCKWHIFK KCQEKLSQVF LEHPTFEADF HKCVNLTESV 420 DEFESCWLAL IDRYDLRDHE WLQTIYSARR HWVPVYLRDT FFAEMSITQR SDSMNSYFDG 480 YINASTSLNQ FFKLYEKALE SRNEKEVKAD YDTMNTSPVL KTPSPMEKQA SEFYTRKLFI 540 RFQEELVGTL TFMASKIDDD SEIIAYQVAK YGEDHKSYDV KFNVLEMRAT CSCQMFEFSG 600 LLCRHVLAVF RVTNVLTLPP HFILKRWTRN AKSSVNLEEH ASGLYTNYLE SHTVRYNTLR 660 HEAFKFVDEG AKSLDVYEVA MSALQDGAKK VALASKNEGR AVMVNGRSRD DLMRHRSSYN 720 LSTGRSHMTA GQSLSEEDMD RKIGELINDL ESANQKCELY RANLLSVLKE IEDHKLQLAI 780 KVQNVKISLK DGI*

Sequence ? help Back to Top

Protein Sequence Length: 794 aa Download sequence Send to blast

MENEVIEFDI GLGGGVGSSG REVDDDGVDI EHPVDDEDMI DSPQNISGGG GFGGGSGEIY  60
LPEGDLLDLE PYEGMEFESE EAAKAFYNSY ARRVGFSTRV SSSRRSRRDG AIIQRQFVCA  120
KEGFRNLNEK RTKDREIKRP RTITRVGCKA SLSVKMQDSG KWVVSGFVRA HNHELVPPDQ  180
VHCLRSHRQI SGPAKTLIDT LQAAGLGPRR IMSALIKEYG GISKVGFTEV DCRNYMRNNR  240
QRSLEGDIQL LLDYLKQMHA ENANFFYAVQ NDEDQSMCNV VWADSRSRMN YTYFGDTVTF  300
DTTYRSNRYR LPFAPFTGVN HHGQPILFGC AFMINESESS FVWLFKTWLM AMSGRPPVSI  360
TTDHDTVVGS AIAQVFPETR HRFCKWHIFK KCQEKLSQVF LEHPTFEADF HKCVNLTESV  420
DEFESCWLAL IDRYDLRDHE WLQTIYSARR HWVPVYLRDT FFAEMSITQR SDSMNSYFDG  480
YINASTSLNQ FFKLYEKALE SRNEKEVKAD YDTMNTSPVL KTPSPMEKQA SEFYTRKLFI  540
RFQEELVGTL TFMASKIDDD SEIIAYQVAK YGEDHKSYDV KFNVLEMRAT CSCQMFEFSG  600
LLCRHVLAVF RVTNVLTLPP HFILKRWTRN AKSSVNLEEH ASGLYTNYLE SHTVRYNTLR  660
HEAFKFVDEG AKSLDVYEVA MSALQDGAKK VALASKNEGR AVMVNGRSRD DLMRHRSSYN  720
LSTGRSHMTA GQSLSEEDMD RKIGELINDL ESANQKCELY RANLLSVLKE IEDHKLQLAI  780
KVQNVKISLK DGI*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.I01547.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010028878.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A059APS0	0.0	A0A059APS0_EUCGR; Uncharacterized protein
STRING	XP_010028878.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Eucgr.I01547.1.p
Entrez Gene	104419060

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]