PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.I01625.1.p

Common Name

EUGRSUZ_I01625

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GRAS

Protein Properties

Length: 693aa MW: 76143.3 Da PI: 5.5766

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.I01625.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	423.8	1.4e-129	329	690	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 lv+lLl+cAeav+++d la+++L rl ++p gd+mqR+ ++f+eAL +rl++ v+ + k +ps+ s+ ++l ++++++ ++P++kf Eucgr.I01625.1.p 329 LVHLLLACAEAVAKEDYLLARQYLDRLYRVVTPIGDSMQRVGSFFAEALDERLTSRVTAT-KFSKPSRLSSPVPPNSLEIHQILYRACPYIKF 420 68**************************************************944444.4446666666678999999********* PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186 +h+taNqaI ea++ eervH+iD+di qG QWp+++qaLa+Rp+g+p lRiTgvgs e+++etg+ La++A++l++pfef++ v+++l Eucgr.I01625.1.p 421 AHFTANQAIFEAFADEERVHVIDLDILQGYQWPSFMQALAARPGGAPFLRITGVGS----CIEMVSETGRCLAELARSLRLPFEFHP-VSEQL 508 ****************************************************....***********************.7 PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279 e+l+++ L+++ gEalaVn+v lhr++ s +l s +L ++++ P +v++veqea+hn++ Fl rfleal+yysa+fdsl++++p++s Eucgr.I01625.1.p 509 EALKPHLLHWRVGEALAVNSVNCLHRVP--SICLGS----LLTMIRDQAPSIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLNVTFPSNS 595 ***********************9..777777....************************************************* PP GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372 +r+kvE+ ++++ei+n+vaceg er+erhe+lekWr+ +e GF vplse+a++q k+l+ ++ gy++ e+ g+l+lgW+dr++v+ Sa Eucgr.I01625.1.p 596 VHRAKVEQLVFAPEIRNIVACEGPERTERHERLEKWRKVMEGRGFAGVPLSENAMTQSKTLVGLYSRGGYTLREDMGCLLLGWQDRAIVASSA 688 ******************************************************************************************* PP GRAS 373 Wr 374 Wr Eucgr.I01625.1.p 689 WR 690 *8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.755	303	670	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.8E-127	329	690	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 693 aa Download sequence Send to blast
MINSLCGSMG SLRAQSSRTQ IQPSLPTNDP ASQSNSTLPC PDSMENGKAA ALTPPSLEYT 60 SPRFDVVDNP TMDSPTTALL ASILSSDQMD GLDYMMCSPG RNLPSLESAL THNYNHAQAM 120 QGQSVSGCSP PRFASQQGCP YSGGRMERGL SPLQGVLSSA RKSDQVTVQS DCISLDFLED 180 YNVTDEFGGY SLSGPVPGFG TTECFDVQTT ATASLEMPNA PTFHAGPAEE AIGGDYKYET 240 CQEIGGFCNA KSLASATTLT EQLQREHCQE QQQLSSFVVH VPTNCEQVIC TRTCAHTLTN 300 LEVRNLMPLN HLSQLMFVSQ QEQDRGLQLV HLLLACAEAV AKEDYLLARQ YLDRLYRVVT 360 PIGDSMQRVG SFFAEALDER LTSRVTATKF SKPSRLSSPV PPNSLEIHQI LYRACPYIKF 420 AHFTANQAIF EAFADEERVH VIDLDILQGY QWPSFMQALA ARPGGAPFLR ITGVGSCIEM 480 VSETGRCLAE LARSLRLPFE FHPVSEQLEA LKPHLLHWRV GEALAVNSVN CLHRVPSICL 540 GSLLTMIRDQ APSIVTLVEQ EASHNGPYFL GRFLEALHYY SAIFDSLNVT FPSNSVHRAK 600 VEQLVFAPEI RNIVACEGPE RTERHERLEK WRKVMEGRGF AGVPLSENAM TQSKTLVGLY 660 SRGGYTLRED MGCLLLGWQD RAIVASSAWR CS*

Sequence ? help Back to Top

Protein Sequence Length: 693 aa Download sequence Send to blast

MINSLCGSMG SLRAQSSRTQ IQPSLPTNDP ASQSNSTLPC PDSMENGKAA ALTPPSLEYT  60
SPRFDVVDNP TMDSPTTALL ASILSSDQMD GLDYMMCSPG RNLPSLESAL THNYNHAQAM  120
QGQSVSGCSP PRFASQQGCP YSGGRMERGL SPLQGVLSSA RKSDQVTVQS DCISLDFLED  180
YNVTDEFGGY SLSGPVPGFG TTECFDVQTT ATASLEMPNA PTFHAGPAEE AIGGDYKYET  240
CQEIGGFCNA KSLASATTLT EQLQREHCQE QQQLSSFVVH VPTNCEQVIC TRTCAHTLTN  300
LEVRNLMPLN HLSQLMFVSQ QEQDRGLQLV HLLLACAEAV AKEDYLLARQ YLDRLYRVVT  360
PIGDSMQRVG SFFAEALDER LTSRVTATKF SKPSRLSSPV PPNSLEIHQI LYRACPYIKF  420
AHFTANQAIF EAFADEERVH VIDLDILQGY QWPSFMQALA ARPGGAPFLR ITGVGSCIEM  480
VSETGRCLAE LARSLRLPFE FHPVSEQLEA LKPHLLHWRV GEALAVNSVN CLHRVPSICL  540
GSLLTMIRDQ APSIVTLVEQ EASHNGPYFL GRFLEALHYY SAIFDSLNVT FPSNSVHRAK  600
VEQLVFAPEI RNIVACEGPE RTERHERLEK WRKVMEGRGF AGVPLSENAM TQSKTLVGLY  660
SRGGYTLRED MGCLLLGWQD RAIVASSAWR CS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-88	318	689	7	378	Protein SCARECROW
5b3h_A	1e-88	318	689	6	377	Protein SCARECROW
5b3h_D	1e-88	318	689	6	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269\|PubMed:23122845}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.I01625.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269\|PubMed:23122845}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010030721.1	0.0	PREDICTED: scarecrow-like protein 21
Swissprot	G7L166	0.0	RAM1_MEDTR; GRAS family protein RAM1
TrEMBL	A0A059APV0	0.0	A0A059APV0_EUCGR; Uncharacterized protein
STRING	XP_010030721.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16510	10	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	1e-92	RGA-like 1

Link Out ? help Back to Top
Phytozome	Eucgr.I01625.1.p

Publications ? help Back to Top
Tang H, et al. An improved genome release (version Mt4.0) for the model legume Medicago truncatula. BMC Genomics, 2014. 15: p. 312 [PMID:24767513] Pecrix Y, et al. Whole-genome landscape of Medicago truncatula symbiotic genes. Nat Plants, 2018. 4(12): p. 1017-1025 [PMID:30397259]