PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.I01633.1.p

Common Name

EUGRSUZ_I01633

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

WRKY

Protein Properties

Length: 181aa MW: 19935.6 Da PI: 10.3208

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.I01633.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	83.6	1.9e-26	109	159	9	59
EEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 9 KYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 YGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ +v++tYeg+H+h+ Eucgr.I01633.1.p 109 QYGQKAVKNNRFPRSYYRCTHPGCNVKKQVQRLSKDEGMVVTTYEGTHTHP 159 6*************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	21.987	109	161	IPR003657	WRKY domain
SuperFamily	SSF118290	9.55E-22	109	160	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	3.3E-23	109	159	IPR003657	WRKY domain
Pfam	PF03106	1.4E-20	109	159	IPR003657	WRKY domain
SMART	SM00774	2.8E-25	110	160	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MERHQMLFPC PADVRPPPPQ PPLTSFPFAF EAGGSRVQSS AGFGSHLMSS SVHGFLGLSG 60 AEDGIAQRSK AEYDAAHGSS VSGGAEKIGK KKGEKKVRRP RIAFQTRSQY GQKAVKNNRF 120 PRSYYRCTHP GCNVKKQVQR LSKDEGMVVT TYEGTHTHPI QKSTENFEHI LSQMQIYPPF 180 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-16	109	160	25	76	Probable WRKY transcription factor 4
2lex_A	4e-16	109	160	25	76	Probable WRKY transcription factor 4
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.I01633.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010028984.1	1e-73	PREDICTED: uncharacterized protein LOC104419129
TrEMBL	A0A059AQ42	1e-131	A0A059AQ42_EUCGR; Uncharacterized protein
STRING	XP_010028984.1	4e-73	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM509	28	154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	4e-42	WRKY DNA-binding protein 75

Link Out ? help Back to Top
Phytozome	Eucgr.I01633.1.p