PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I01641.1.p
Common NameEUGRSUZ_I01641, LOC104419134
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 246aa    MW: 27718.2 Da    PI: 9.0004
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I01641.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.0003297119223
                       EETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                       +C+ C+++++++ +L  H +  H
  Eucgr.I01641.1.p  97 SCSVCSRVYPTSRLLSIHVSEaH 119
                       6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.856994IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807194IPR007087Zinc finger, C2H2
SMARTSM003555.496119IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028098119IPR007087Zinc finger, C2H2
SMARTSM003550.18134159IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280136159IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MATMEAEGGG GGGGFPYWTS VRRRFDPDSA FFSSGNVERE LLAKQVALDI TEDERYQLQN  60
LMDEESRGVF CPIVGCGAHL TSLEHFEDHY NARHTASCSV CSRVYPTSRL LSIHVSEAHD  120
SFFQAKVARG FAMYECLVES CGSKFKTYKA RQRHLIDKHK FPTSFEFYKK ALPSRKQRQK  180
NQRKQVTHKK EVAPSAMEVE NEAVDELVSA VSKLSTSDSP TSISFGRRHT RGLPFVPRAI  240
QRERT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I01641.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010028991.10.0PREDICTED: zinc finger protein 511
TrEMBLA0A059APX20.0A0A059APX2_EUCGR; Uncharacterized protein
STRINGXP_010028991.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99712632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-111zinc ion binding;nucleic acid binding;zinc ion binding