PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I01702.1.p
Common NameEUGRSUZ_I01702, LOC104419183
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 400aa    MW: 44927.2 Da    PI: 6.952
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I01702.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.81.1e-0990112426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       + C+f++r+G+Ck+G++C+F H+
  Eucgr.I01702.1.p  90 RDCQFYLRNGWCKFGANCRFGHP 112
                       68******************998 PP
2zf-CCCH28.92e-09132157227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       k+ +C++++  G Ck+G+ C+++H++
  Eucgr.I01702.1.p 132 KQIECKYYSIAGGCKFGEACRYSHSK 157
                       5668********************95 PP
3zf-CCCH36.39.6e-12178202226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       ++++C+f+++ GtC+yG  C+F+H+
  Eucgr.I01702.1.p 178 GRAECPFYMQHGTCRYGIDCRFHHP 202
                       689*********************9 PP
4zf-CCCH28.92e-09306332127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +++++C +f++tG+Cky  +CkF+H++
  Eucgr.I01702.1.p 306 PGQPECAYFMKTGYCKYRHTCKFHHPK 332
                       5789*********************96 PP
5zf-CCCH34.63.3e-11353377226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       +++ Cr++a++G CkyG+ C F H+
  Eucgr.I01702.1.p 353 DRRTCRNYAQFGLCKYGSACLFDHP 377
                       5899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.02387113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-590114IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-790112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.39491114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-492111IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.375130158IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5130157IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5131159IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-7132157IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4136158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.056176204IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-5176203IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-6178203IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-9178202IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.178305333IPR000571Zinc finger, CCCH-type
SMARTSM003560.0026305332IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-5307332IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6309336IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-4311331IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.92351379IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6352380IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-4352378IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-8353377IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4356378IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MATFEGEAEI FPSSLELLQR HRPARPDPDE PPPFFPSPPP AVGPAVESAL VEGMRNVALG  60
EAGDGTGEEK DGNFDDRGPK SHYPFGIYAR DCQFYLRNGW CKFGANCRFG HPVKRTVFEE  120
KRERGEFLEP TKQIECKYYS IAGGCKFGEA CRYSHSKERN EITDQPQLNF VGLPIRLGRA  180
ECPFYMQHGT CRYGIDCRFH HPDPTTVGDF SPDKTSANLA PVGREPKYPK EGPMEDSDYL  240
RYNGILQEYL ASRSLNTASG TQPYWDNGLS HVPGISQSSQ KALAYPQERA GHSKGLLPPE  300
EYPQRPGQPE CAYFMKTGYC KYRHTCKFHH PKDRVSMVPS YYQTDKALPS RSDRRTCRNY  360
AQFGLCKYGS ACLFDHPVPE DSGSSSFGIN PLEDPPAWF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I01702.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010029058.10.0PREDICTED: zinc finger CCCH domain-containing protein 67
TrEMBLA0A059AQE70.0A0A059AQE7_EUCGR; Uncharacterized protein
STRINGXP_010029058.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2297134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.18e-77C3H family protein