PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.I01750.1.p

Common Name

EUGRSUZ_I01750, LOC104419228

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

LBD

Protein Properties

Length: 176aa MW: 19096.3 Da PI: 6.895

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.I01750.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	141	3.8e-44	10	108	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrrkC +dCv+apyfp e+p+kfanvhk+FGasnv+kll+++ +++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++e Eucgr.I01750.1.p 10 PCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVLPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVIRLQKE 102 7******************************************************************************************** PP DUF260 94 lallke 99 l+++++ Eucgr.I01750.1.p 103 LDATNA 108 *99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.276	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-43	10	107	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MASSSYSNPP CAACKFLRRK CLPDCVFAPY FPPEEPQKFA NVHKIFGASN VSKLLNEVLP 60 HQREDAVNSL AYEAEARMKD PVYGCVGAIS VLQRQVIRLQ KELDATNADL MRHACNEMAG 120 NTSLPGPNPG HNYSGSPRES SRYNENNPGY YYPPNYNPWS GGPSGDPDQG GGSAV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-67	10	125	11	127	LOB family transfactor Ramosa2.1
5ly0_B	3e-67	10	125	11	127	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.I01750.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010029135.1	1e-128	PREDICTED: LOB domain-containing protein 25
Swissprot	Q8L8Q3	1e-67	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A059AQE9	1e-127	A0A059AQE9_EUCGR; Uncharacterized protein
STRING	XP_010029135.1	1e-127	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	3e-70	LOB domain-containing protein 25

Link Out ? help Back to Top
Phytozome	Eucgr.I01750.1.p
Entrez Gene	104419228

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]